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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaagtttcatttggagaaatttgtctctgtggtgcactatgggcattcatttttgaagttacaaaaacaaaaaaaaaactaatgcaaataacatctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCCATGAATGGGGACCGGGTTATCATGTGAACCTGATACCTTTCAATCCAAT

Basic information

species Vitis vinifera
transcript Vv13s0019g01070.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046512|gb|FQ453128.1|FQ453128
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352794375|gb|FQ481606.1|FQ481606
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351048097|gb|FQ442067.1|FQ442067
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352786528|gb|FQ479735.1|FQ479735
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351038424|gb|FQ461116.1|FQ461116
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351054685|gb|FQ462715.1|FQ462715
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351035218|gb|FQ458575.1|FQ458575
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|71874359|gb|DT023414.1|DT023414
EST:     CTAC--CCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351032693|gb|FQ462407.1|FQ462407
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|351044866|gb|FQ449120.1|FQ449120
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352795590|gb|FQ480178.1|FQ480178
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|352793767|gb|FQ481122.1|FQ481122
EST:     CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
EST: gi|77585559|gb|DV221873.1|DV221873
EST:     CTAC--CCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAG                         CTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC
genomic: CTACTTCCTGGAAACTAGCCGTCGGGTATCTTTTGAGTACACACTTTTAGgtactgaagt ... tctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgaagttacaaaaacaaaaaaaaaactaatgcaaataacatctttgttagCTGGTGTAAATGATGCTGTGGAGCATGCAATAGAGCTTGCAGAACTACTCCATGAATGGGGACCGGGTTATCATGTGAACCTGATACCTTTCAATCCAAT
                                     aaataac  putative branch site (score: 2)
                                             tctttgtt  CT-rich tract
              aaaaacaaaaaaaaaa  TA-rich tract