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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 7
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactt-tattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                                          |||| ||| || | | | | ||  |   |||     | |||    ||   ||  | | | |  | |    ||||||  |||  |    || ||   ||||| || ||||||||||| ||||| || ||||||||  | ||||| |||||||| ||||||||||| || || ||||||||||| ||  | ||
------------------------------------------------------------------------------------------gtaatatt-tttagttcatacctttttgtct-----tgtgatgtactggattgtagttctccttaataagtattttccaatc-tatctctgta---gAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 3'ss of exon 8
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactt-tattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                                          |||| ||| || | | | | ||  |   |||     | |||    ||   ||  | | | |  | |    ||||||  |||  |    || ||   ||||| || ||||||||||| ||||| || ||||||||  | ||||| |||||||| |||||||||                             
------------------------------------------------------------------------------------------gtaatatt-tttagttcatacctttttgtct-----tgtgatgtactggattgtagttctccttaataagtattttccaatc-tatctctgta---gAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTT-----------------------------

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 14
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctga-aactctactttccaatgcactctcactttattttgaaatggtgatcctata-----acagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                 |  ||||   ||  | |    |  |  || |||  |  |||        |||   |   ||| ||| ||||||    |   ||| | | |   |||  ||   | || | ||| | ||       ||| || |||||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | ||
---------------------------------------------------------------gtaa-cacttcatctttcacttaaacttcaatattagtagctcatag----tcctctttgttatgtgataactctgggctt--atg-atttt---ttttcttaacagtgtttatcatctatgtctgtagAAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 7
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                 |  ||||   ||  | |    |  |  || |||  |  |||    |||       | | |   | |  ||   |||   | |      | ||  |||||   |    ||   || ||   || || |||||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | ||
---------------------------------------------------------------gtaa-cacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtga-taactctgggcttatgattttttattaacagtatttatcatctatg--tctgta---gAAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 4
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctca-ctttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                                 |    |  |  || |||  |  |||  |  |||||  | |    |  | |  ||   |||   | |    ||| | |  |||||   |    ||   || ||   || || || ||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | ||
---------------------------------------------------------------------------------acttaaacttcaatattagtagctca-tagccctctttgttatgagataactctgggcttatgatttttttcttaacagtatttatcatctatg--tctgta---gAAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G044027_T02 (Zea mays), 3'ss of exon 8
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctga-aactctac-tttccaatgcactctca-ctttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                         | |   | ||        |||| |     | |  ||      ||   |   | | ||| |||||||   ||   ||     |||| |  |||||  ||    ||   || ||   || || || ||||||||||| ||||| || ||||||||  | ||||| ||||| || || |||||||| ||||| ||||||||||| ||  | ||
-----------------------------------------------------------------------gtaatacttcatcttgcacttaaactgtaatattagctcatagccctctttattgtgtgataactctaggcttatgatttgtcctcagcaatatttataatctatg--tctgta---gAAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G157772_T01 (Zea mays), 3'ss of exon 5
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctca-ctttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                 |  ||||   ||  | |    |  |  || |||  |  |||  |  |||||  | |    |  | |  ||   |||   | |    ||| | |  |||||   |    ||   || ||   || || || ||||||||||| ||||| || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | ||
---------------------------------------------------------------gtaa-cacttcatctttcacttaaacttcaatattagtagctca-tagccctctttgttatgagataactctgggcttatgatttttttcttaacagtatttatcatctatg--tctgta---gAAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

upper sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G177373_T02 (Zea mays), 3'ss of exon 8
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctca-ctttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                                                                 |  ||||   ||  | |    |  |  || |||  |  |||    |||       | | |   | |  ||   |||   | |    ||| | |  |||||   |    ||   || ||   || || |||||||||||||| || || || ||||| ||  | ||||| |||||||| || |||||||| ||||| ||||||||||| ||  | ||
---------------------------------------------------------------gtaa-cacttcatctttcacttaaacttcaatattagtagctcatagccctctttgttatgtga-taactctgggcttatgatttttttcttaacggtatttatcatctatg--tctgta---gAAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699424|gb|EE076409.1|EE076409
EST:     GGCTGAATCTCCGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCCATACTTATGGACCCCGAATGAATATTG
genomic: GGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|71882833|gb|DT031888.1|DT031888
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110703601|gb|EE080591.1|EE080591
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACANGCAGCATGGAATAA                         AGATACNNGATTGC-AGGATATTCAATACTTATGGACCCCGAATGAATATT
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACG-GATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATT
EST: gi|30303799|gb|CB980593.1|CB980593
EST:     GGCTGAAACTTTGATGTTTGATTATCACAGGCGGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110361965|gb|EC925471.1|EC925471
EST:     CTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: CTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|27583335|gb|CB006030.1|CB006030
EST:     TGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: TGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110357315|gb|EC920771.1|EC920771
EST:     GCGAGTGGCTGACACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110723901|gb|EE099257.1|EE099257
EST:     CGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCCA-CATGGAATAG                         AAATACGGATTGCCCAGAATAT-CAATACTTATGGACCCCGAATGAATATT
genomic: CGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGC-AGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCC-AGGATATTCAATACTTATGGACCCCGAATGAATATT
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|30303733|gb|CB980527.1|CB980527
EST:     GGCTG-AACTCTGATGTTTGATTATCACAGGCGGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110721290|gb|EE098120.1|EE098120
EST:     CGAGTGGGCTGAA-CTCTGATGTTTGATTATCACAGGCAGCATGGGATAA                         AAATACCGGATTGCCCAGGATATTCAATACCTATGGACCCCGAA
genomic: CGAGTGG-CTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATAC-GGATTGCC-AGGATATTCAATACTTATGGACCCCGAA
EST: gi|110727671|gb|EE104694.1|EE104694
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATC-CAGGCAGCATGGAATAG                         AGAAACGGATTGGCAGGA
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGA
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110719051|gb|EE096588.1|EE096588
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110732601|gb|EE108029.1|EE108029
EST:     CTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: CTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|33408479|gb|CF214106.1|CF214106
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|71862913|gb|DT011968.1|DT011968
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110692310|gb|EE071412.1|EE071412
EST:     CGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATTAG                         AGATACGGAATGCCAGGATATTCAATACTTATGGACCCCGAATGAAAATT
genomic: CGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAAT-AGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATT
EST: gi|32246001|gb|CD711820.1|CD711820
EST:     GATG-TTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110360290|gb|EC923209.1|EC923209
EST:     GATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|110356627|gb|EC919593.1|EC919593
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
EST: gi|30299440|gb|CB976234.1|CB976234
EST:     GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAG                         AGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG
genomic: GCGAGTGGCTGAAACTCTGATGTTTGATTATCACAGGCAGCATGGAATAGgtaaaattgg ... cctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactctactttccaatgcactctcactttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG
                   ctctcac  putative branch site (score: 3)
                        actttattttgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaattgggctccctctctctgatccatacacccaacacacagacacccccacacctacacacattcactcagtcactgatgggatgtgtaaaattgttcactcccttcccctccctctctctatctgaaactctactttccaatgcactctcactttattttgaaatggtgatcctataacagAGATACGGATTGCCAGGATATTCAATACTTATGGACCCCGAATGAATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA