Sequence
atgc intronic sequence ATGC exonic sequencegtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G43550.1 (Glycine max), 3'ss of exon 8
gtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctac-tctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
|| ||| || | ||||| | | | | | || ||| | || | || || | | | ||||||||||||||||| || || || || ||||| |||||||| |||||||||| | ||| || ||||| ||| || |||||||| |||| ||| |||||
---------------------------------------------------------------------------gtaccttcaaccttgctttcattacttgt-----agcattcagtaacaacatattgatttgtattccctccaatattttggcagGAAATCTTCTTAATCGGACACTGGGACTTCTGAAAAAGAACTGCCAATCAATTCTGGTGGTGGATTCCACTACAGCTGCTGAAGGAAATGAATTCAAGGA
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G23250.1 (Glycine max), 3'ss of exon 8
gtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
| |||| | | ||||| | | | || | || ||| | | ||| || | | | | ||||||||||||||||| || || || || ||||| |||||||| |||||||||| | ||| || ||||| ||| || |||||||| |||| ||| |||||
----------------------------------------------------------------------------gtactttcaacctactttcattacttgt-----aacattcagtaacaaatattgatatgtatttccttcgctattttggcagGAAATCTTCTTAATCGGACACTAGGACTTCTGAAAAAGAACTGCCAATCAATTCTGGTGGTGGATTCCACTACAGCTGCTGAAGGAAATGAATTCAAGGA
upper sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G55400.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
| ||| || | | | | | || || | || | | ||| | || | | | |||||| | | |||| ||| ||| | |||||||||||||||||||||| ||||| |||||||||||||| || |||| ||||| | || || || || ||||||| ||||| | | || || ||
----------------------------------gtttcttactctacgaaaactaaatcttaagtagttgttcagccttttggttatttggtacagaacttgtttctgaaaaatgtttatcaatgcat-------------------ttctcttcagGAAATCTTCTTAACCGTACTCTTGGTCTTCTTAAAAAGAACTGTGAATCCACTTTAGTGGTAGACTCGACAGTTGCAGCCGAAGGAGTTCCTTTGAAAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374714|gb|EC939637.1|EC939637EST: GGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTG GAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAA
genomic: GGAGGACCGCTTCATCAATATTGTCAATGCACATCTTGCCAACACAATTGgtatttctac ... ctctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
cctactct CT-rich tract
aatacataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttctactttgtttttttttttttttctatcttctctaacgcctacttccccctttttccattaaggatttggttgctttgctttttcattcatgattggactctgaaggtagggtggcaatacataagatgacctttgtacctactctatgcagGAAATCTTCTTAACCGTACCCTTGGGCTTCTTAAAAAGAATTGCCAATCAACTTTGGCAGTCGATTCAACTCTTGCAGCTGAAGGCAATGCATTTAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG