Sequence
atgc intronic sequence ATGC exonic sequencegtgctgcatcaattacatattgatttcttatgataacaacatggtgaaagtctcttatttttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G10370.1 (Glycine max), 3'ss of exon 8
gtgctgcatcaattacatattgatttcttatgataacaacatggtgaaagtctctt----att--tttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
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gtgatgcataaataaagtactttctctctgttatgccatc----tgtaatttttttgggtactaatttatttcaaatgcatatttcagGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAGTTGCTG
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 5
gtgctgcatcaattacatattgatttcttatgataacaacatggtgaaagtctctt----att--tttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
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gtgatgcttaaataaagtacttgttctctgttatgccatc----tgtaattcttttgggtactaatttatttcaaatgcatatttcagGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAATTGCTG
upper sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G43560.2 (Glycine max), 3'ss of exon 8
gtgctgcatcaattacatattgatttcttatg------ataacaacatggtgaaagtctcttattttta----------------tttccaaat-catttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
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gtgatgaatagacaaagtacttgtttcctattagcattacgacaatattttaaaatgtttttattgttagttgttactaactggattttcaaatacatctttcagGAGATGCTTAGTTCTTCTAAAACAGCTTACAGGGTTCAAACATTTGATTTAATTCTAAATTTTGGGGTTCATGCTCATCTCCTAGAGCCAATCATAGTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgataacaacatggtgaaagtctcttatttttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
tgataac putative branch site (score: 2)
ttatttttatttccaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctgcatcaattacatattgatttcttatgataacaacatggtgaaagtctcttatttttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG