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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatctttagatacttggataatttgagatctcatgtatttttgtgcttatattatgagtttgtggtcctgctctggtgagaaaagtgttggttatgggctgacattaatggtataatatgacagGTAACTGGGCAGCATTCAGCCCAGTTGAACATAATCCTTTGCAAGCTTATAGTCATTCCCCTGGTTTGGGAAATATCAGCCCTATAAACAGCAACCATTT

Basic information

species Vitis vinifera
transcript Vv12s0142g00100.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713064|gb|FC062145.1|FC062145
EST:     TCGAAGTTTTCGACATCATGTAGGTTCACCAGTTACCAACTCTCCTCCAG                         GTAACTGGGCGGCATTCAGCCCAGTTGAACATAATCCTTTGCAAGCTTATA
genomic: TCGAAGTTTTCGACATCATGTAGGTTCACCAGTTACCAACTCTCCTCCAGgtgagtatct ... aatatgacagGTAACTGGGCAGCATTCAGCCCAGTTGAACATAATCCTTTGCAAGCTTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctggtgagaaaagtgttggttatgggctgacattaatggtataatatgacagGTAACTGGGCAGCATTCAGCCCAGTTGAACATAATCCTTTGCAAGCTTATAGTCATTCCCCTGGTTTGGGAAATATCAGCCCTATAAACAGCAACCATTT
                                 cattaat  putative branch site (score: 3)
                                  attaatggtataatat  TA-rich tract