Sequence
atgc intronic sequence ATGC exonic sequencegtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G46000.1 (Glycine max), 3'ss of exon 8
gtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
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-----------------------------------atttccttattataagga--aaaaactgtagccttcc-ttaaagtctttgaattttg-------tatcttaaaattaactttt--ttattcttcttactatgctataaatagTGATAACAAACCAAGAAGGGAGAAAAAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATG
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G10710.1 (Glycine max), 3'ss of exon 9
gtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaatac-caatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatata-attgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
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----------------------------------------------gcacacattggcacgttgctagcattcctaaaagtctttg-atggggacaattttgtatcttaaa--attaacttttgattcttatatactatggtactatagTGATAACAAACCAAGACGGGAGAAAGAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATG
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G32050.1 (Glycine max), 3'ss of exon 9
gtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
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------------------------------------------------gtatctatatatcaatgaattcaaactcattcttt----tttaagtaattgaccttataataatattctaattga---tgattaatttt--------agTAATAACAAACCCAGATGGGAGGAAGAGCATGTTGAAACTGGCTGAGAGAATGGTCATAAGCTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATG
upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G38430.1 (Glycine max), 3'ss of exon 9
gtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaattt-caattgaattctaaggatttaggcaacaacatatgtag--aacgattattactaaacctat-ataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
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-----------------------------------gtatctatct-atctatatatatatcaatgaattcacactcattctttaaatttcttttttcttaattatgtaattgaccttaattataatattaattataatgatgatttta--gTGATAACAAACCAAGATGGGAGGAAGAGCATGTTGAAACTTGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCATCCACTGCACACACATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351024273|gb|FQ423696.1|FQ423696EST: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTG TGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
genomic: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGgtagtaattt ... cactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
EST:
gi|110418253|gb|EC984389.1|EC984389EST: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTG TGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
genomic: GCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGgtagtaattt ... cactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
tactaaa putative branch site (score: 1)
attattactaaaccta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtaattttattttgttgtatttttcccacattaaatttatatcataaagaccaataccaatgaatttcaattgaattctaaggatttaggcaacaacatatgtagaacgattattactaaacctatataattgtcactgcacagTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA