1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatcaacataattatacaatattgttttttctattaagatgtttgaagctataattcttctcatggattccatagcttacagggttttgaattgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAAAAGGTTTTGTCTCTTTTATCTCCTCCGCAAAAAATCATAGAGAATCGA
species | Vitis vinifera |
transcript | Vv12s0059g01600.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGCTCTTCTTCAAGCGTGCACACCAGCAAAGCTTGCTTCATTGCTCAT GAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAEST: gi|71888009|gb|DT037064.1|DT037064
genomic: GAAGCTCTTCTTCAAGCGTGCACACCAGCAAAGCTTGCTTCATTGCTCATgtatgcatgg ... attgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGA
EST: GAAGCTCTTCTTCAAGCATGCACACCAGCAAAGCTTGCTTCATTGCTCAT GAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAEST: gi|71889388|gb|DT038443.1|DT038443
genomic: GAAGCTCTTCTTCAAGCGTGCACACCAGCAAAGCTTGCTTCATTGCTCATgtatgcatgg ... attgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGA
EST: GAAGCTCTTCTTCAAGCATGCACACCAGCAAAGCTTGCTTCATTGCTCAT GAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAEST: gi|71888604|gb|DT037659.1|DT037659
genomic: GAAGCTCTTCTTCAAGCGTGCACACCAGCAAAGCTTGCTTCATTGCTCATgtatgcatgg ... attgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGA
EST: GAAGCTCTTCTTCAAGCATGCACACCAGCAAAGCTTGCTTCATTGCTCAT GAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGA
genomic: GAAGCTCTTCTTCAAGCGTGCACACCAGCAAAGCTTGCTTCATTGCTCATgtatgcatgg ... attgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGA
aagctataattcttctcatggattccatagcttacagggttttgaattgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAAAAGGTTTTGTCTCTTTTATCTCCTCCGCAAAAAATCATAGAGAATCGA
agcttac putative branch site (score: 3)
ataattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaacataattatacaatattgttttttctattaagatgtttgaagctataattcttctcatggattccatagcttacagggttttgaattgttgcagGAAATTAACTCTGGATGAAGGCCTTCGAGAAAAACAAATTGTTGCTGCTGAAAAGGTTTTGTCTCTTTTATCTCCTCCGCAAAAAATCATAGAGAATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - aacataa
- - - - - - - - - - - - - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catagct