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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttgttcatccatttatgcctctttatatgttggcttaaattctctgaagctgaaaattgttgtcctacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCCTTGGCAGTCTTTGCTTTGAGAGACATAAATTTGACAAAG

Basic information

species Vitis vinifera
transcript Vv12s0059g00750.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G31940.1 (Glycine max), 3'ss of exon 7
---gtaggttttgttcatccatttatgcctctttatatgttggctt--aaattctctgaagctgaaaattgttgtcctacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCCTTGGCAGTCTTTGCTTTGAGAGACATAAATTTGACAAAG
     || |  | || ||| ||          | |||     |||   | |||||||  | |  |  |||   ||  |   ||||||||||| |||||||||||  |||| ||||| ||||||||| | ||||| || |||||||| ||||| ||||| ||||||||||| |  |||
gtaaaagctccttttgatctatgaccattgtctcataatcatgctacaagattctctagaaccaatcatt--cgttat---tttcagACAAGTATTGTGTTTACGCTGGATGAAGGACCTGGAGTACTGTTTAAGGCTTTGGCAGTATTTGCATTGAGGGACATAAATTTAAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583171|gb|CB005866.1|CB005866
EST:     TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG                         ACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
genomic: TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAGgtaggttttg ... tacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
EST: gi|30129079|gb|CB914418.1|CB914418
EST:     AGAACCAATAAGCTCTTTAAG                         ACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
genomic: AGAACCAATAAGCTCTTTAAGgtaggttttg ... tacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
EST: gi|51052564|gb|CO819624.1|CO819624
EST:     TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG                         ACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
genomic: TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAGgtaggttttg ... tacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
EST: gi|110418797|gb|EC984974.1|EC984974
EST:     TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAG                         ACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
genomic: TGGTCCTTGCAAGGGATCCTATAATTCCAAGAACCAATAAGCTCTTTAAGgtaggttttg ... tacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
EST: gi|30329365|gb|CD012627.1|CD012627
EST:     TAATTCCAAGAACCAATAAGCTCTTTAAG                         ACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC
genomic: TAATTCCAAGAACCAATAAGCTCTTTAAGgtaggttttg ... tacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttatatgttggcttaaattctctgaagctgaaaattgttgtcctacatttcagACAAGCATTGTGTTTACTTTGGAAGAAGGCCCTGGAGTATTATTTAAAGCCTTGGCAGTCTTTGCTTTGAGAGACATAAATTTGACAAAG
                                       ttgtcct  CT-rich tract
              ttaaattct  TA-rich tract