1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatggatacaaatattaacctctcttttcatctcaatcctgacatcttactcttaatttcacatttcatcctcagaatttaattttataagattttgcagATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCTCCATGCGTTTTTAGACCCAAAACGTTCTATGACCCAACACTATGGTGCA
species | Vitis vinifera |
transcript | Vv12s0059g00300.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGAACTTCGAGACTTCACAGCAAACCTGGTTGCTTCAATATGCAAAAG ATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCTEST: gi|122692206|gb|EC995506.1|EC995506
genomic: TGGGAACTTCGAGACTTCACAGCAAACCTGGTTGCTTCAATATGCAAAAGgtggggcata ... gattttgcagATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCT
EST: AATATGCAAAAG ATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCT
genomic: AATATGCAAAAGgtggggcata ... gattttgcagATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCT
cttactcttaatttcacatttcatcctcagaatttaattttataagattttgcagATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCTCCATGCGTTTTTAGACCCAAAACGTTCTATGACCCAACACTATGGTGCA
tcagaatttaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggatacaaatattaacctctcttttcatctcaatcctgacatcttactcttaatttcacatttcatcctcagaatttaattttataagattttgcagATTTGGGCATGTTTATAACAATCTGCAAACGCGGCTGACAAAGACTCTGCTCCATGCGTTTTTAGACCCAAAACGTTCTATGACCCAACACTATGGTGCA
- - -atacaaa
- - - - - - - - - cctctct
- - - - - - - - - - - - - -tcatctc
- - - - - - - - - - - - - - - - - - -cctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcctc