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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagttctttgagaaaataaatatatagatacagaatcaatcaatattaccttctttgttaatatacattaatgtctattgctcttgtgctttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG

Basic information

species Vitis vinifera
transcript Vv12s0057g01200.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 3'ss of exon 8
ttagttctttgagaaaataaatatatagatacagaatcaatcaatattacc-ttctttgttaatata-cattaatgtcta--ttgctcttgtgctttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG
   |||||   ||      ||   | |||| || | |  | || |  |    |  |||  |   |||    || | | ||  ||| || |    |   |  ||||||||||| |||||| | ||||||||||| || ||||| ||||||||||| ||| |||| ||||| || ||||||||||| |||||
---gttctaaaagcttgccaaggaaaagat-cacatttgaacatttctgtaatattttagtgccataatggtactatgtaatttgatcattatgtgcctcttagTTTGACCCAGTGAAACTGAAGAAGCTCCGTCCTAGTTTCAAGGAGAATGGTGGTACTGTTACTGCTGGGAATGCTTCTAGTATAAG

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G866758_T02 (Zea mays), 3'ss of exon 8
----ttagttctttgagaaaataaatatatagatacagaatcaatcaatattaccttctttgttaatatacattaatgtctattgctcttgtgctttt-tgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG
       |||| |||   ||  |  | |      |   | |     || || |   |   ||  | | |  ||| ||||||  |||| ||    || | |  ||||||||||| || ||| ||||||| || || || ||||| ||||||||||| ||| | || || || || ||||||||||| |||||
atgcaacgttccttgcataatgagctttgctagcagttatttg--taagatcaa--tgcatgacagttt-tatttatgtcttgtgctattccttttgtgtcttagTTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G47860.2 (Glycine max), 3'ss of exon 7
ttagttctttgagaaaataaata--tatagatacagaatcaatcaatattaccttctttgttaatatacattaatgtctattgctcttgtgctttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG
  | ||||    | |||| | |   |||||  |     |   |  ||| |  |   |   |  | ||  ||  ||   |||   |    |    | ||| |||||||  |||  || |||   || || || || ||||| ||||||| |||||||||||| ||||| ||||||||||| ||||||||
--acttctagctgcaaattagttactatagtcattagttttgtgtatacttgcagttgaatacaaatcaatatattgttatattttccttttcctatgccagTTTGATGCTGCCAAGTTACGCAAACTTCGGCCAAGTTTCAAGGAGACTGGAGGTTCTGTTACTGCTGGCAATGCTTCCAGCATAAG

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G00760.2 (Glycine max), 3'ss of exon 5
ttagttctttgagaaaataaatatatagatacagaatcaatcaatattaccttctttgttaatatacattaatgtctattgctcttgtgctttt----tgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG
     |  | |     || | | |    |||   | |   |   | |||| |||  | | |||| | || ||| | |  |  | || | |||||    ||| |||||||  |||  || |||   || || || || ||||| ||||||| |||||||||||| || || ||||||||||| ||||||||
---acttctagctgctattattgttactatagtcattatttttgtcttactttcagt-tgaatacaaataaatatattgttatattttccttttcctatgccagTTTGATGCTGCCAAGTTACGCAAACTTCGGCCAAGTTTCAAGGAGACTGGAGGTTCTGTTACAGCTGGCAATGCTTCCAGCATAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110398909|gb|EC965389.1|EC965389
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30126694|gb|CB912033.1|CB912033
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30133903|gb|CB919242.1|CB919242
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|71876405|gb|DT025460.1|DT025460
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110699364|gb|EE076300.1|EE076300
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110403296|gb|EC964774.1|EC964774
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110701385|gb|EE078893.1|EE078893
EST:     AAGAGGGAGAC-ATCAACTATTGGTGACAAGGATGAANGGTCTAGGAAA-                         TTTGACCCTGTGAAATTAAAGA-GCTCC
genomic: A-GAGGGAGACCATCAACTATTGTTGACAAGGATGAA-GGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCC
EST: gi|161716985|gb|FC066530.1|FC066530
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30129594|gb|CB914933.1|CB914933
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30128765|gb|CB914104.1|CB914104
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110700654|gb|EE077500.1|EE077500
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110398035|gb|EC964108.1|EC964108
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30254555|gb|CB971300.1|CB971300
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30130051|gb|CB915390.1|CB915390
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30129595|gb|CB914934.1|CB914934
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|349833317|gb|FQ416695.1|FQ416695
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110698167|gb|EE075418.1|EE075418
EST:     AAGAGGGAGACCATNCA-CTATTGTTGACAAGGATGAAGGTCTANGAAAA                         TTTGACCCTNGTGAA-TTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGG
genomic: AAGAGGGAGACCAT-CAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCT-GTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGG
EST: gi|110723249|gb|EE100343.1|EE100343
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110368276|gb|EC932247.1|EC932247
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110371396|gb|EC935385.1|EC935385
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|71859317|gb|DT008372.1|DT008372
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATT
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATT
EST: gi|27584750|gb|CB007445.1|CB007445
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|33402805|gb|CF208432.1|CF208432
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|34543095|gb|CF511327.1|CF511327
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110361968|gb|EC925474.1|EC925474
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30133750|gb|CB919089.1|CB919089
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|30299187|gb|CB975981.1|CB975981
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110361336|gb|EC924802.1|EC924802
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110362059|gb|EC925566.1|EC925566
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110357331|gb|EC920800.1|EC920800
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110702702|gb|EE078902.1|EE078902
EST:     GAAG-GGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAAGAAAA                         TTTGACCCTGGTGAACT-AAAGAAGCTCCGAC
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTG-TGAAATTAAAGAAGCTCCGAC
EST: gi|33403297|gb|CF208924.1|CF208924
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|71858509|gb|DT007564.1|DT007564
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
EST: gi|110723122|gb|EE100072.1|EE100072
EST:     GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAA                         TTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA
genomic: GAAGAGGGAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAAgtaagtgcat ... tttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaccttctttgttaatatacattaatgtctattgctcttgtgctttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG
                     cattaat  putative branch site (score: 3)
                                    ctcttgtgcttttt  putative PPT
      ttctttgttaatatac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagttctttgagaaaataaatatatagatacagaatcaatcaatattaccttctttgttaatatacattaatgtctattgctcttgtgctttttgctagTTTGACCCTGTGAAATTAAAGAAGCTCCGACCCAGTTTTAAGGAGAATGGAGGTTCTGTCACTGCAGGCAATGCTTCTAGCATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - -aaaataa
- - - - - - - - - - - - - agataca
- - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgc