Sequence
atgc intronic sequence ATGC exonic sequencegtaagccatctagatatttgcattgtacagtcaagcgtatggtagatatttttgtatgttattcttatttttcagccgtatgaactgtttttttctttcattcatttgttgtttatttatttctattattgttacaggctgtttggtcagattgtgaataggttttctgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G07990.2 (Glycine max), 3'ss of exon 6
gtaagccatctagatatttgcattgtacagtcaagcgtatggtagatatttttgtatgttattcttatttttcagccg--tatgaactgtttttttctttcattcatttgttgtttatttatttctattattgttacaggctgtttggtcagattgtgaataggttttctgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
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-----------------gtaaatctcctattt---ttcaccttagctcttttt-tatggataagctattcaacagtagataatgcacagtaattgaaaagcaagcttaccatatttggatatcccctttcccttggcaaataaattgcttgacttttta-----tttattgttttta-cagGTGAAACACTGCAAGACGAACGAATTAATGGAGGTGCATTTATTGGTGCTGATGGTGTTCAGTTCCCTCACAAGCTAATACCT
upper sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G19720.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaagccatctagatatttgcattgtacagtcaagcgtatggtagatatttttgtatgttattcttatttttcagccgtatgaactgtttttttctttcattcatttgttgtttatttatttctattattgttacaggctgtttggtcagattgtgaataggttttc--tgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
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-------------------------------------------------------------------------------ggtcatgatactttggttactggcagaagcacattttataacagcattctctttat--gttgggttctttgattgttaataatttctcatggtgtttttcagGTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCG
upper sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G19720.3 (Arabidopsis thaliana), 3'ss of exon 8
-gtaagccatctagatatt--tgcattgtac--agtca--agcgtatggtagatatttttgtatgttattcttatttttcagccgtatgaactgtttttttctttcattcatttgttg---tttatttatttctattattgt-tacaggctgtttggtcagattgtgaataggttttc--tgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
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gtttagttaaatgcatattgttcaattcgactgggtcaccagactgcgatgattacacatgga-atgatgtatgctaatcaatca-atcattggtcatgatactttggttactggcagaagcacattttataacagcattctctttatgttgggttctttgattgttaataatttctcatggtgtttttcagGTGAGACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTTTCACATAAGCTAATACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattgttacaggctgtttggtcagattgtgaataggttttctgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
ttttctgtcttt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagccatctagatatttgcattgtacagtcaagcgtatggtagatatttttgtatgttattcttatttttcagccgtatgaactgtttttttctttcattcatttgttgtttatttatttctattattgttacaggctgtttggtcagattgtgaataggttttctgtctttggcagGGGAAACACTGCAGGATGAAAGGGTTAATGGAGGAGCATTTGTTGGCACTGATGGTCTTCAGTTCCCACAAAAGCTGATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT