Sequence
atgc intronic sequence ATGC exonic sequence...ctttatagatcacatcagtagacttgtgacttggtttgcttcttttgccctatgttgatggtcctcttactgttatcttttcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 4
ctttatagatcacatcagtagacttgtgacttggtttgcttcttttgccctatgttgatggtcctcttactgttatcttt-tcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
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-cttgaagatatta-caatgg---tgtactttatctggaaaacattaggttgtgattctt-tctacttactatcttatatgttatgtttctatattggaaggctagGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAA
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G00490.1 (Glycine max), 3'ss of exon 4
ctttatagatcacatcagtagacttgtgacttggtttgcttcttttgccctatgttgatggtcctcttact-gttatcttt----tcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
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--ttatccttgaagatattacaatggtg---tactttatctggaaaacattaggttgtgattctttctacttactatcttatatgttatgtttctatattggaagGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAA
upper sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 7
-----ctttatagatcacatcagtagacttgtgacttggtttgcttcttttgccctatgttgatggtcctcttactgttatcttttcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
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ttagaactgatggcacatgctataaaggacattatggggcttttatattaatatgtgtcttaaaaatttgatt-----catcgtttgtgcctaatgtttttgcagGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgccctatgttgatggtcctcttactgttatcttttcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
ctcttac putative branch site (score: 3)
ttatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttatagatcacatcagtagacttgtgacttggtttgcttcttttgccctatgttgatggtcctcttactgttatcttttcatggttatctgttggcagGCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAA
- - - - - cacatca
- - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - -tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg