1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgctacttctatttacagaatttttgaaagctcaaatctgtcatttaaacccaaaggaagcctcagaataagattccatgtgtttaaattgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAG
species | Vitis vinifera |
transcript | Vv12s0035g01060.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|110726124|gb|EE101641.1|EE101641
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACEST: gi|27580396|gb|CB003091.1|CB003091
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|161715603|gb|FC067769.1|FC067769
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACEST: gi|27579322|gb|CB002017.1|CB002017
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|156736132|gb|EV240253.1|EV240253
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACEST: gi|27581595|gb|CB004290.1|CB004290
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|27581007|gb|CB003702.1|CB003702
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|30130728|gb|CB916067.1|CB916067
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTATEST: gi|27579129|gb|CB001824.1|CB001824
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
EST: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAG GTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAT
genomic: CTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGgtgatattat ... tgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTAC
ttaaacccaaaggaagcctcagaataagattccatgtgtttaaattgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAG
tgtttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctacttctatttacagaatttttgaaagctcaaatctgtcatttaaacccaaaggaagcctcagaataagattccatgtgtttaaattgctgtgcagGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAG
atgctac
- - - - - - - - - - - - - - - - - - - ctgtcat
- - - - - - - - - - - - - - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgt