Sequence
atgc intronic sequence ATGC exonic sequence...tcctagtttgatttgtccgtgtgatagacctgtggaaaatcatttctttacatctaatatatgttttttaatgtttgacaacttcccctcatctttgaagGGAGAAGGATGCTGAAACACGAGACTTTCTGGAAGCAGCCAAAGCATGTGTAGAAATTTGCCACTCCCATGGAGTACCTCTATTGATAAATGACCGAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g00320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G20080.1 (Glycine max), 3'ss of exon 8
tcctagtttgatttgtccgtgtgatagacctgtggaaaatcatttctttacatctaatatatgttttttaatgtttgacaacttcccctcat--ctttgaagGGAGAAGGATGCTGAAACACGAGACTTTCTGGAAGCAGCCAAAGCATGTGTAGAAATTTGCCACTCCCATGGAGTACCTCTATTGATAAATGACCGAATC
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tcagtccttattctctccttttcctcagtcaatacctaa--atctccacaatttcaacaggcacaaattattttatcctgatttacgtcaatgacttttcagGGAGAAGGATGCTGAGACACGAGATTTTCTTGAAGCTGCCAAAGTGTGCCTCGAAATATGCCATTCCTATGGAGTACCTTTACTTATAAATGATCGTATA
upper sequence: Vv12s0035g00320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G29140.1 (Glycine max), 3'ss of exon 7
----tcctagtttgatttgtccgtgtgatagacctgtggaaaatcatttctttacatctaatatatgttttttaatgtttgacaacttcccctcatctttgaagGGAGAAGGATGCTGAAACACGAGACTTTCTGGAAGCAGCCAAAGCATGTGTAGAAATTTGCCACTCCCATGGAGTACCTCTATTGATAAATGACCGAATC
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tcagtccctattctctcattttcctcagtcaatacctaaatctccacaattt--caacaggcacgaattattttatcctgatttacgtctc-tgatttttca-gGGAGAAGGATGCTGAGACACGGGATTTTCTTGAAGCTGCCAAAGAATGCCTCAAAATATGCCATTCCTATGGAGTACCTTTACTTATAAATGATCGTATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttacatctaatatatgttttttaatgtttgacaacttcccctcatctttgaagGGAGAAGGATGCTGAAACACGAGACTTTCTGGAAGCAGCCAAAGCATGTGTAGAAATTTGCCACTCCCATGGAGTACCTCTATTGATAAATGACCGAATC
cttcccctcatcttt CT-rich tract
atctaatatatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctagtttgatttgtccgtgtgatagacctgtggaaaatcatttctttacatctaatatatgttttttaatgtttgacaacttcccctcatctttgaagGGAGAAGGATGCTGAAACACGAGACTTTCTGGAAGCAGCCAAAGCATGTGTAGAAATTTGCCACTCCCATGGAGTACCTCTATTGATAAATGACCGAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - -ggaaaat