Sequence
atgc intronic sequence ATGC exonic sequence...tatattttaaatgccggagttgctttatttattaattttaatttttgggtaaaaaaatgttttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 3'ss of exon 8
tatattttaaatgccgg--agttgctttattt-attaattttaatttttgggtaaaaaaatgttttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
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--cagcttacatgccacctgataattctattttgttgcctttcatatcttattttcatt-tctgcgtatttaaatcttatctattgcaacttttgtggtgcagATTATTTTGTGACGAAATGTGGTGTACTTTTAATGTCACTCTTTGTTTTTTTCACAACCACCATGTCTGTTTCATTTACCCTGAGAGAGACGCAATCCCG
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G05080.1 (Glycine max), 3'ss of exon 8
---------------------------------------------------tatattttaaatgccggagttgcttta--tttattaattttaatttttgggtaaaaaaatgttttga-gacaagttatgctttttg-gttttgtttt---tgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
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gtttgttgatttatccttctatctgcctgagcaccccatatttgaagagattgttttcatgatctcaactttaatttgagtttctcctgtttgcccaataattcagaacttctactgttggcttgtaacaattaacatgtatcattttgcctgtgcagACTATCTTGTAACAAAGTGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCG
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G19970.1 (Glycine max), 3'ss of exon 8
---------------------------------------------------tatattttaaatgccggagttgcttta-tttattaattttaatttttgggtaaaaa-----aatgtt---ttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
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gtttgctaatttatccttctatttgcttgagcaccccatatttgaagagattgttttcatgacctcaacattatttgagtttctcctgtttgcccaataattcagaactcctactgttggcttgtaacaactaacatgtgtca-ttttgcct--gtgcagACTACCTTGTAACAAAGTGTGGTGTGCTGATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCG
upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 3'ss of exon 9
------------------------------------------------------------------------------------tatattttaaa----tgccggagttgctttatttatt-----aattttaatttttgggtaaaaaaatgttttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
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gtttgtcattttctgtcacggaaacagcatatgttgaaaactttcccttgaatctcgcaagtctatcgattatgagcgttacgttggattggaagatcttaccttggctgctttattagctcttgcaacttttatctgtagtttggtgtaagcatttactttaagagtaatattttaatgccggtgtatgcagATTACTTGGTGACGAAATGTGGTGTCCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTGTATCATTCACATTGCGAGAGACACAAACTCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggtaaaaaaatgttttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
ttttgttttt CT-rich tract
aaaaaaatgttttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatattttaaatgccggagttgctttatttattaattttaatttttgggtaaaaaaatgttttgagacaagttatgctttttggttttgtttttgtgcagACTATCTGGTGACCAAGTGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - aaatgcc
- - - - - - - - - - - - - - - - - - - - - ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagacaa