Sequence
atgc intronic sequence ATGC exonic sequence...ttctttaatatgcccataccctagaatgttttattttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G30320.1 (Glycine max), 3'ss of exon 5
ttctttaatatgcccataccctagaatgttttattttttgttgtt-----gtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
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-----tggactactcatcgactgaaggattaacaagcttagcgtctatgaatcaaaaatacgcttagcttctagttatgactcaaacttcttttttctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTACAGCCTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATCTAAAGGCC
upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G13450.2 (Glycine max), 3'ss of exon 7
ttctttaatatgcccatacc-ctagaatgtttt--attttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
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-actgaagtatttatctattaccagcacacttctgatttgtgactgaaggattaat--aacttagcttctagttatgactcgaacttcttttttctggtgcagACAAATTTCTCTAGACTGCATGTTCTTGGAGTCTCAGCACATAATTGATTACAGCCTTCTGTTGGGATTACATTTTAGAGCTCCGGAGAATTTAAAGGCC
upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G19860.1 (Glycine max), 3'ss of exon 5
-----ttctttaatatgcccataccctagaatgttttattttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
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tgtatcatgacaaattgacaattgcattcaatatcccattaactgc----atagttggtaaattgaccttctaatcataaccagaatttgattt-tctgttgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC
upper sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G05150.2 (Glycine max), 3'ss of exon 5
-----ttctttaatatgcccataccctagaatgttttattttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
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tgtatcatggcaaattgacaattgcattcaacatcccattaactgc----atagttggtaaattgaccttctaatcataaccagaaattgattt-tctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349830180|gb|FQ420440.1|FQ420440EST: TTATCTTATGAATTTCATATGGATAAATCATTGCGGAAGTCCCTCTTTCA ACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTA
genomic: TTATCTTATGAATTTCATATGGATAAATCATTGCGGAAGTCCCTCTTTCAgtaagttcct ... tcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
ttcattttcttctctc CT-rich tract
tttagtaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttaatatgcccataccctagaatgttttattttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - -ccatacc
- - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa