Sequence
atgc intronic sequence ATGC exonic sequencegtacgcttgattgaaactgttaatcactgtgatttcttctctgttttactcatgttgttcctcctggcattcctatcaatttattactatgcccctgtgaacttattaatgattgaattttatctttgtggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g00970.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G05350.1 (Glycine max), 3'ss of exon 24
gtacgcttgattgaaactgttaatcactgtgatttcttctctgttttactcatgttgttcctcctggcattcctatcaatttattactatgcccctgtgaacttattaatgattgaattttatctttgtggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCA
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-------------------------------------------------gtaaaatgttttaaatagga--catattacatatttgtcat-cccctgtggctgctatatttatatgggtgactaaatgtgtttttacagGAGGACAGTACATTCCCAGGCATGAGATTCAGAAACTAGACAAATGTGCTGCTACGCTTCTAATGGGTTGCAGTAGTGGTTCATTGACCTTACCTGGTCA
upper sequence: Vv12s0034g00970.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G19650.1 (Glycine max), 3'ss of exon 26
gtacgcttgattgaaactgttaatcactgtgatttcttctctgttttactcatgttgttcctcctggcattcctatcaatttattactatgcccctgtgaacttattaatgattgaattttatctttgtggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCA
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-------------------------------------------------gtaaaatgttttgaatagta--catattacatatttgtcat-cccctgtggctcctatatttatatggttgactgaatttgtttttacagGAGGGCAGTACATTCCCAGGCATGAGATTCAGAAACTAGACAAATGTGCTGCTACGCTTCTAATGGGGTGTAGTAGTGGTTCATTGACCTTACCTGGTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187724|gb|CF607077.1|CF607077EST: TGGAGCTTTGAAAAGTCACGACCTCTTTATATATATTGGCCATGGAAGTG GGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTG
genomic: TGGAGCTTTGAAAAGTCACGACCTCTTTATATATATTGGCCATGGAAGTGgtacgcttga ... ggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactatgcccctgtgaacttattaatgattgaattttatctttgtggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCA
tattaat putative branch site (score: 2)
aacttattaatgattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcttgattgaaactgttaatcactgtgatttcttctctgttttactcatgttgttcctcctggcattcctatcaatttattactatgcccctgtgaacttattaatgattgaattttatctttgtggtggttcagGGGCACAGTATATTCCCAGGCATGAGATTCAGAAACTGGAAAATTGTGCTGCTACTCTCCTAATGGGATGCAGTAGTGGATCATTGTCTCTAAATGGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA