Sequence
atgc intronic sequence ATGC exonic sequence...acttggagaaaagaaactcaaaaaaatttaaatttaagatcttgctcctctttcattgttacataagcctaggcactgacttgatgattactttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 8
-----------acttggagaaaagaaactcaaaaaaatttaaatttaagatcttgctcctctttcattgttacata--agcctaggcactgacttgatgattactttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
| || | | | ||| | || ||| | |||| ||| | ||| |||||| | | | ||||| | ||||| || | ||||| ||||||||||||| |||||||| || | ||||||||||| || || |||||||||||||| ||||| || || ||||| || || | ||||| |
gttagtaatatatttctatatatttcactggaccaattttttaattaa---tttgaggcaatttagttgttaaaaactgattgtgccactgccacttgcattaccttttacagTTTCTGAAGTTTGTTGAAAAGACTGCCCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCGGCTGGCCTGACCGCTTCTGTAATCCAAGATAGTG
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------acttggagaaaagaaactcaaaaaaattta--aatttaagatcttgctc-ctctttcattgttacataagcctaggcact-----gacttgatgattac--tttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
| ||| | || | | ||||| || | | | || | |||| || | ||| | || || |||| ||||| ||| | ||||| ||||||||||||| |||||||| || | ||||||||||| || || |||||||||||||| ||||| || || ||||| || || | |||||
gttagttttatgtgtatatatattttgccagaccaattttttaattaatttgtggcaattgagttgttaaaaacctattgggccactgccattttcattttttcgttcacattgtagcttgttttctcctgtgagttgaccattaccttttttacagTTTCTGAAGTTTGTTGAAAAGACTGCCCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCAGCTGGCCTAACCGCTTCTGTAATCCAAGATAGCG
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G07690.2 (Arabidopsis thaliana), 3'ss of exon 8
----acttggagaaaagaaactcaaaaaaatttaaatttaagatcttgctcctctttcattgttacataa-gcctaggcactgacttgatgattactttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
| | ||| | || | | ||||| | | | | || | ||| | | | | ||| || || || | || || | ||| ||||| | |||||||| |||||||| |||||| | |||||||||||||| || || || ||||| |||||||| || |||||||||||||||||||||| |
ttcaagtgttagattacaatccttacaaaatgtctgtgttatttccaacacctgtagcttacatgtttaaagcttaattgcttattt-----tttttctctctagTTTCTTAAGTTTGTGGAGAAGACGGCTCCAATTGCTGTTTATACATCTGGAAAGGGTTCATCGGCTGCTGGGCTCACAGCTTCGGTGATTCGAGATAGCA
upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S355_49V6.1 (Physcomitrella patens), 3'ss of exon 9
acttggagaaaagaaactcaaaaaaatt-taaatttaagatcttgctcctctttcattgttacataagcctaggcactgacttg-atg-attactttc----tgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
| ||| ||| || | | || | | | ||| |||||| | | || || || ||| | || || |||| | || ||||||||||||||||| || | ||||||||||| || || || ||||| ||||||||||| ||||| || || || ||||| || ||
------tttagttcccttcagtaaagttctgggtccgtcgactgggatggcaatagctgt-acataatacccacgaaggatgtgtgtgtattgccttggctatgcagTTCCTAAAATTTGTTGAGAAGACTGCACCGATTGCTGTTTATACCTCTGGAAAGGGCTCCTCAGCTGCTGGGCTTACTGCATCCGTTATTCGTGACTCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctctttcattgttacataagcctaggcactgacttgatgattactttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
ttactttct CT-rich tract
ttacataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acttggagaaaagaaactcaaaaaaatttaaatttaagatcttgctcctctttcattgttacataagcctaggcactgacttgatgattactttctgaagTTTTTGAAGTTTGTTGAGAAGACTGCTCCAGTAGCTGTTTATACATCAGGGAAAGGCTCATCAGCTGCTGGTCTTACAGCTTCGGTGATTCGAGATAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -aaagaaa
- - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg