Sequence
atgc intronic sequence ATGC exonic sequence...gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttcatttatgtttttaagtgtgtctaatctattatgttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 9
gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttca--tttatgtttttaagtgtgtctaatctattat---gttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
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--gtgagttttgttcttccacttaatctctacttcggtcctttattgaggattttataactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 8
---gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttcatttatgtttttaagtgtgtctaatctattatg---ttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
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gtgagttttgttctgccacttaatctctactttggttctttaccgaggattttataacttctatttccctttgcattgacctaaaaatattgagtggttatggcagGAGCCTCTCTTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAG
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 3'ss of exon 8
----------------------gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttcatttatgtttttaagtgtgtctaatcta-ttatgttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
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gttagtagcttattgattctcaagtttaacttacataattgtccatattatatccggttcggtatgattttgagtactattttcttgttcaagtgtctgactggttttcttacccctttacagGAACCACTCTTAAAAATAGAGCTAAACAATCCTGCTTTGCTTGCTGGGAATTGGACACAGCTCTGTGCAACATGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaataatgtgttcatttatgtttttaagtgtgtctaatctattatgttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
gtctaat putative branch site (score: 3)
tctaatctattatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttcatttatgtttttaagtgtgtctaatctattatgttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - -cttacca
- - - - - - - - - - - - - - - - - - - - - - -aaataat