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...atgttcatatgttgagaatgaaattatttcattcttttaaaatatcattggatgttcactggaggttactctaatgtgatctttattctttgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTAACCTCTTTATCTGGACCAGTAAAATTGGCGGATCTGCAAAGAATTTTA
species | Vitis vinifera |
transcript | Vv11s0065g00450.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|110395278|gb|EC960936.1|EC960936
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAATTGATGTEST: gi|33405732|gb|CF211359.1|CF211359
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|110391622|gb|EC956610.1|EC956610
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|351028718|gb|FQ433148.1|FQ433148
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|22011495|gb|BQ796529.1|BQ796529
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|110377829|gb|EC942921.1|EC942921
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTEST: gi|161716363|gb|FC068095.1|FC068095
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
EST: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAG AGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
genomic: GGCCCAGTACAAATTTCTGAAGACATGGTTGAGGATGATATTTCATCAAGgtagacctct ... tgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGT
cattggatgttcactggaggttactctaatgtgatctttattctttgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTAACCTCTTTATCTGGACCAGTAAAATTGGCGGATCTGCAAAGAATTTTA
tctttattcttt CT-rich tract
tttattctttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcatatgttgagaatgaaattatttcattcttttaaaatatcattggatgttcactggaggttactctaatgtgatctttattctttgatttccagAGCTGGAAATTTAGTTGGCCCCAGCCTTGGTGCAGAAGTGACAAGTGATGTAACCTCTTTATCTGGACCAGTAAAATTGGCGGATCTGCAAAGAATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - aaaatat
- - - - - - - - - - - - - - - - - - - - - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgga