Sequence
atgc intronic sequence ATGC exonic sequence...atgctctgtcaacattgttttatacatatgccacgagttacaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 3'ss of exon 8
atgctctgtcaacattgttttatacatatgccacgagttacaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
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---------gtatatttttctgtttgttagttacc-----ccgaactgtcaaagttgattgttcatcaataga-tgacaaaaatcccttct-atttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAG
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G820727_T02 (Zea mays), 3'ss of exon 8
-atgctctgtcaacattgttttatacatatgccacgagtt-acaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
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agaacattataattattacttcaaat-taggctgttagtttatcccgaactccacaattgattgtttaacaacagctga-taaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G20400.2 (Glycine max), 3'ss of exon 9
atgctctgtcaacattgttttatacatatgccacgagttacaaagtttttttcctttcctgtttttttattttctgagtagtcttct--ttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
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--gccctgagcccagaaaatctcaggattggtcctgctcttgtgccttagcctaccctgtaattcctagttttctgactttttttatacttaccctatgtagAGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAACGATACGTTGCTCACAGTACAATTCAG
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G25620.1 (Glycine max), 3'ss of exon 9
------atgctctgtcaacattgttttatacatatgccacgagttacaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG--
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gctcttatgcctaagatatcttagattctgtacctgttattatccttagcctactatgttattcctatttttctgacttttttgtactttccct------atgtagAGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAGCGCTACATTGCTCACAGTACAATTCAGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
tcttctttcttatat CT-rich tract
tgtttttttattttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgctctgtcaacattgttttatacatatgccacgagttacaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG
- - -ctgtcaa
- - - - - - - - - - - - catatgc