Sequence
atgc intronic sequence ATGC exonic sequencegtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 3'ss of exon 7
---------gtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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gtgctatacttttgaatgagctccatattaatagtcttaactctgaagtaactcttctatggaggccttctcattgacccttcagtttaat-taaacagAAAGAAGGACGGCAGCGTGGAACTTGGAGTGGAAAAAAGAATGACAATGATTATTACAAAATGATT
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G147500_T01 (Zea mays), 3'ss of exon 8
gtgtca-gtctgccaat-tgcttgt-tctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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gtgatatgcctgtgaatcttcttgaatgttaggtcttaatactatattgttt-----tgtttttggatcttatttggttactgaacttatcagAAAGAAGGACGACAACGCGGAACATGGAATGGAAAAAAGAACGACAATGATTATTACAAAATGATT
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G07040.2 (Glycine max), 3'ss of exon 8
gtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagc--atttcataa----ttggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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--------gtaccagctatccatttag----tttggactttgcttggaagatattcaatttcatgagaatttggtatttatgatgtgtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATT
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G00980.1 (Glycine max), 3'ss of exon 8
gtgtcagtctgcca-attgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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gtaccagctatccatgtagtttggactttg-cttggaagatattttatttcatgataatt------tggtatttatgatgtgtgtaaacagAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATT
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 3'ss of exon 6
gtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgct----tggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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gtacta-tatgcgatttgaaataact---attatcgagttttcttagactatcctctttcgctaatgaacattttcctgtaaatatatgcacagAAAGAAGGGAGACAGCGTGGAACATGGAGTGGGAAGAAAACTGACTCTGATTTCTACAAAAAAATT
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G57410.2 (Arabidopsis thaliana), 3'ss of exon 8
gtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaaca---gAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
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-----------------gttctttaccagcttcttgg-ttttttgcactcaagggattttctatttgactgat-tatctgatgtatatactagAAAGAAGGGAGGCAACGTGGTACCTGGAATGGCAAGAAGACTGATACCGACTTCTATAAAAAGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
atttcataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtcagtctgccaattgcttgttctgagatttctgaatttttttggttgaaagcatttcataattggcctttgtgcttggtgtaaacagAAAGAAGGGCGACAACGTGGGACATGGAATGGAAAGAAGACTGACAATGATTTCTATAAAAAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG