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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttgttccaaacattcatgaaattctatttttcttatgatgtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA

Basic information

species Vitis vinifera
transcript Vv11s0052g00840.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os11g19060.1 (Oryza sativa), 3'ss of exon 8
----gtgagtttttgttccaaacattcatgaaattctatttttcttatgat-----gtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA
     ||   | |   ||  | || | || |         ||  |||||||      |  ||||  |  ||  | |||   |  |    |    || || ||||| ||||| ||||| || || || ||||| || ||||||||||||||| | || || ||||| || || ||||| ||||||||||| |||||||||||
atggatggagtatgtctcacatcactgatcactcagacccttaattatgattaaaaatcatttcaaagctgatactgagattaattaacaaaccttgca-gGCACCCAAGAGGAAGCTGCAGAGGCATATGATATCGCTGCAATCAAATTCCGTGGTCTCAATGCTGTGACAAACTTTGACATGAGCCGGTACGATGTCAA

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G07010.1 (Glycine max), 3'ss of exon 8
----------------gtgagtttttgttccaaacattcatgaaattctatttttcttatgatgtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA
                 ||  | ||| ||  ||   ||  |||  |  || | ||  ||  ||    ||  | || | |       | | ||||  |     ||  |||||| ||||||||||| || || ||||||||||||||||| ||||||||||| ||  ||||||||||||| ||||| |||||||| || ||||| || ||
ccactagtccaatttcatgtttatttattttaatagtttgtgatttaatactattaataaaattaacttgggcatttttt------tttattgtttaaaaaatt--agGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTAACAAACTTTGACATGAGTCGCTACGACGTGAA

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G00950.1 (Glycine max), 3'ss of exon 8
-----------gtgagtttttgttccaaacattcatgaaattctatttttcttatgatgtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA
              | |   |  ||   |     ||   ||  | |  |  | || |  |    | |   || |   |  || ||||||  |     ||  |||||| ||||||||||| || || ||||||||||||||||| ||||||||||| ||  |||||||||| || ||||| |||||||| || |||||||| ||
taccaaaatggccaaatcccttatctctagtccaattgcatattttagtaataataaaattaacttgggcatttttttttat-tgttgtttaaaaaatt--agGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGATGTAAA

upper sequence: Vv11s0052g00840.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G57390.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------------gtgagtttttgttccaaacattcatgaaattctatttttcttat-gatgtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA
                                    ||||||   | | | | |  || ||||| |   || |   | || | | || ||  |  |      |  | | | | |  |  |  ||||| ||||||||||| ||||| || ||||| ||||| || || || ||||||||| | || ||||||||||| ||||| |||||||| || ||||| ||||||||
gtgagtcccatttgaacatttttatgaatacatttagtgagtccgtat-caatatttttatgaattctgatctaaataattgttatgattatgatttaacacaaaagtatttggatgcggaatttca-gGCACTCAAGAGGAAGCTGCAGAAGCTTATGATATAGCAGCGATCAAATTCCGCGGTCTAAATGCAGTCACCAATTTCGACATCAGTCGATATGATGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatgatgtgttttcgtatatgtgaatgaatgtgttgtcgatgtttttcaagGCACTCAAGAAGAAGCAGCCGAAGCCTATGACATTGCTGCAATCAAATTCAGAGGCCTAAATGCAGTAACCAACTTCGACATGAGCCGATACGATGTCAA
                                            tgtttttc  CT-rich tract
                                           atgttttt  TA-rich tract