1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttattggtctggtacatttttatccttttttttcctgtttttacatcatcttaagggttcataatctgatccttctctcataaaatttcacccttaccagAAGCAGAAGATCAAGTAGTTTCTTTGGATCTATTATACCCGACTCTGTAAATGATGTGTTGGATCCAGCTCATCATGTACTTCACAATGTTGTGCCTGCA
species | Vitis vinifera |
transcript | Vv11s0037g00970.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTCTGTTCATGCTTTCTCTCTGGGACTTGGCATGAATCAAAG---A A-GCAGAAGATCAAGTAGTTTCTTTGGATCTATTATACCCGACTCTGTAAA
genomic: CAGGCTCTGTTCATGCTTTCTCTCTGGGACTTGGCATGAATCAAAGGTGAgaactacatt ... cccttaccagAAGCAGAAGATCAAGTAGTTTCTTTGGATCTATTATACCCGACTCTGTAAA
tcatcttaagggttcataatctgatccttctctcataaaatttcacccttaccagAAGCAGAAGATCAAGTAGTTTCTTTGGATCTATTATACCCGACTCTGTAAATGATGTGTTGGATCCAGCTCATCATGTACTTCACAATGTTGTGCCTGCA
atctgat putative branch site (score: 4)
tttcaccctt putative PPT
tcataaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattggtctggtacatttttatccttttttttcctgtttttacatcatcttaagggttcataatctgatccttctctcataaaatttcacccttaccagAAGCAGAAGATCAAGTAGTTTCTTTGGATCTATTATACCCGACTCTGTAAATGATGTGTTGGATCCAGCTCATCATGTACTTCACAATGTTGTGCCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - -ggtctgg
- - - - - - - - - - - - - - - -ttcctgt
- - - - - - - - - - - - - - - - - - - - - -catcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat