Sequence
atgc intronic sequence ATGC exonic sequence...tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 8
tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttca-gtgcta-agcagattcattt-tgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
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-----------gtacgtgac-ataaattttcattctttgtaccttcagata--tttcttcagttttttttttcgtatgttatgacactaccacctgtaaacagGTTGCTCGGAAAATGAGAGAGGAGGATGGATTTTATTATCCCCATAATCTTGATTTTCGTGGCCGTGCATACCCTATGCATGCACATCTAAGCCACCTAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 3
---tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttcagtgctaagcagattcatt-ttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
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taatcgcataatctgaactaagtttaccattatcatgttcaatactatcccatg-tttcactagtt---gagcaataatttaaagaaaatacattcttaaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCTCACAATCTTGATTTCCGTGGTAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G24890.1 (Glycine max), 3'ss of exon 1
---tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttcagtgctaagcagattcatt-ttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
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taattgaataatctgaactaagtttaccattatcacattcaatactatcccatg-tttcactagtt---gagcaataatttaaaggaaatacattcttaaacagGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCACACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCATTTGAATCATTTAG
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G07940.1 (Glycine max), 3'ss of exon 8
----tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
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agtgttgcataatctcaactaaattttgtataattattttcaaatctattccataa-ttcactaactgaaaa---ttaattgcaataaaatacatttgaaacagGTGGCTCAGAAAATGAAAGATGAGGAAGGCTTTTATTATCCCCACAATGTTGACTTCCGCGGCAGAGCATATCCCATGCATTCTCATTTGAATCATTTAA
upper sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G24120.2 (Arabidopsis thaliana), 3'ss of exon 8
tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttg--taagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
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--------------gtaagaaatacattcttactgctt-aagacttttcgttccgtcttcacttaactaggaaaagatatagactaaaggttatcattgcagGTGGCTAGAAAAATGAAGGACGAAGAAGGATTCTACTACCCTCACAATCTTGACTTTAGAGGCCGTGCATACCCAATGCATCCTCATCTGAATCATCTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaagaactttgttcatttgtaagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
ttcatttt CT-rich tract
attcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcctaatgcagatttgattatgtattgccatgactggaagtctcgaagaactttgttcatttgtaagcttcagtgctaagcagattcattttgaacagGTGGCTCGAAAAATGAAAGATGAAGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGTGCGTACCCAATGCATCCACATTTGAATCATCTGA
- - ctaatgc
- - - - - - - - - - - - - - -ccatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaga