1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ataatatcttgatatcacaacttatttgccttccactgctggggctatttttaattgctgtgacacttgttgttcatcaaattaccttttgcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAGCGACTGAAACCAAGTTTATTCACAGAAAATACCTTCATTGTGCGAGAAG
species | Vitis vinifera |
transcript | Vv11s0037g00230.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGG GTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAGEST: gi|110388758|gb|EC953541.1|EC953541
genomic: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGGgtaagttctt ... gcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAG
EST: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGG GTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCCATTTGTGAGEST: gi|33408226|gb|CF213853.1|CF213853
genomic: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGGgtaagttctt ... gcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAG
EST: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGG GTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCCATTTGTGAG
genomic: ATCTCAGAAGGGATATCAAACGCCACCTCTGTCTGGCTTTGGTGAGGAGGgtaagttctt ... gcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAG
tatttttaattgctgtgacacttgttgttcatcaaattaccttttgcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAGCGACTGAAACCAAGTTTATTCACAGAAAATACCTTCATTGTGCGAGAAG
ttttaat putative branch site (score: 3)
ccttttgc putative PPT
atcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatatcttgatatcacaacttatttgccttccactgctggggctatttttaattgctgtgacacttgttgttcatcaaattaccttttgcaattacagGTTCCTCTATTTGAGAATATGGATGAGAGGTTGCTGGATGCTATTTGTGAGCGACTGAAACCAAGTTTATTCACAGAAAATACCTTCATTGTGCGAGAAG
- - - - - - - tcacaac
- - - - - - - - - - - - - - ccttcca
- - - - - - - - - - - - - - - - - -ctgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatcaa