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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtctattgctctctcaattttaactaaaggccttctgaccaaatcctgatccactaggagaaacctttactgagtgcagGAAATGCTTCTGCGTGTCTGTTGTGCAATGCTGCTGTGCATAAAAAGCAGACTATTGAGTGGTGATTTTGCAGCCAACCTAAAGCTTTTACAGCACTACC

Basic information

species Vitis vinifera
transcript Vv11s0016g05350.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G12320.1 (Glycine max), 3'ss of exon 10
----------------------------------------------gttggtctattgct---ctctcaattttaactaaaggccttctgaccaaatcctgatccactaggagaaacctttactgagt-------gcagGAAATGCTTCTGCGTGTCTGTTGTGCAATGCTGCTGTGCATAAAAAGCAGACTATTGAGTGGTGATTTTGCAGCCAACCTAAAGCTTTTACAGCACTACC
                                                     || | ||   ||  |||| |||  |   |   | ||   ||  |  ||||  |  |   |  ||||    | | |       |||||| |||||||| ||  ||||||| |||||||| || ||| | ||||||| |||  | |||||||||||||   ||||  |||| |||||||| |||||||
gtttaggtatctctctctcaatcaaactcctcggcaaactttcaggaaaaaattaatacttagcttacaatattag-tgtggttttacttgtca--ttttgattaataatatgttacctggcttaaatttcttttgcagGATATGCTTCTTCGGATCTGTTGCGCAATGCTACTTTGCGTGAAAAGCAAACTGCTAAGTGGTGATTTTGTGACCAATTTAAAACTTTTACAACACTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaggccttctgaccaaatcctgatccactaggagaaacctttactgagtgcagGAAATGCTTCTGCGTGTCTGTTGTGCAATGCTGCTGTGCATAAAAAGCAGACTATTGAGTGGTGATTTTGCAGCCAACCTAAAGCTTTTACAGCACTACC
                                       cctttact  CT-rich tract