Sequence
atgc intronic sequence ATGC exonic sequence...ttggagagtatttatactcatgactgcaaaaagaatgtgtttgatgccttacaagaataatgacttccatccttctaaaggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 7
----------------ttggagagtatttatac--tcatgactgcaaaaagaatgtgtttgatgccttacaagaataatgacttccatccttctaaa--ggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
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tgcaatgggccttgaataggcagacaataatacagctagggttttcacttttataagtaagtggtttta-attaatcaaaacttttgtcaaaatggcttagATTATTCTT-TATTTTCAGACAGTTCATCAAAATGGATATGAGCAAGATCCATATGCGAAGGAATTTGGGATCAACATTAGTGAGAAGCTAACCTATGTTG------------------
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 9
ttggagagtatttatactcatgactgcaaaaagaatgtgtttgatgccttacaagaat-----aatgac---ttccatccttctaaaggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
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-------gtgatttcatcctttaatagtcatataagctcttcctcatcaaacaaaaatttgtgtttggcctgttttatttatctagaacttccctatt-tacttgcagACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGAGAACAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 8
---------ttggagagtatttatactcatgactgcaaaaagaatgtgtttgatgccttacaagaataatgacttccatccttctaaaggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
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acttcatcctttatagtcatgtaagctctt--cctcttcaaacataagttt--tgtttggcctggcctgc----tttatttatctagaacttccctatta-acttgcagACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccttacaagaataatgacttccatccttctaaaggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
ttctaaa putative branch site (score: 2)
tattttc putative PPT
attatattttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggagagtatttatactcatgactgcaaaaagaatgtgtttgatgccttacaagaataatgacttccatccttctaaaggttcacgattatattttcagACCATTAACCAAAATGGGTATGAGAAAGATCCCTATGCGAAGGAGTTTGGCATCACTGTAGATGAAAAGCTTGCTTCAGTTGAAGCTCGAGTTCTACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - -tcatgac
- - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - acaagaa