Sequence
atgc intronic sequence ATGC exonic sequence...aaattgtgatgtgtgcctcataagtttacttatttatttatctattcatctttgcctaatcttaattttaattttgttaaccatgctcagcaatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 8
aaattgtgatgtgtgcctcataagttt---acttatttatttatctattcatctttgcctaatcttaattttaattttgttaaccatgctcagcaatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
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---ctattttatttccgtttacagtttttaagctgatactaaatgtagttggaagtatattttggaagatatatactaattctccatttcaatgtatttgcagGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCG
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 8
-----aaattgtgatgtgtgcctcataagtttacttatttatttatctattca--tctttgcctaatcttaattttaattttgttaaccatgctcagcaatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
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tttacagtttttaagctgttact---aaatttagttggaagtatactttgtaagatatatactaattctccattttaatttttatggttcaatttg----cttgcagGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCG
upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 8
----------------------------------------------------------------------aaattgtgatgtgtgcctcataagtttacttatt-tatttatctattc---atctttgcctaatcttaattttaattttgttaaccatgctcag--------caatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
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gtatttttacctaacgttttcctgtcaaaagacataacaatgcttacattttttggggttttttaacacttgaatacactttgt-tcacatgcggttatttcttgtattcattttcaccataggttcgctttctctattttgtcgtttgatttgttatcttcgattctctttctcttttcagGCTAGAAAACACATTAAATTATGGTCTCGAGAGAGTTTGGGCCATTGGTTACATCAAAAGTTCTCGGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatctttgcctaatcttaattttaattttgttaaccatgctcagcaatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
tgttaac putative branch site (score: 2)
taatcttaattttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaattgtgatgtgtgcctcataagtttacttatttatttatctattcatctttgcctaatcttaattttaattttgttaaccatgctcagcaatttacagGCTTGAAAACACATTAAATTATGGACTTGAACGAGTTTGGGCCCTGGGATGTATGAGAGGTTCACGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - tgatgtg
- - - - - - -tgcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgct