Sequence
atgc intronic sequence ATGC exonic sequencegtattaatttcttgccctacattaaaaaggaaaatactaattctggttttttccaaacaccacctttattaatttcaaaagctttctcattttttatacaaaattatcaataagtgaaaaatccaaatggggttgattttttttccttttttttaatgaatactttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G09180.3 (Glycine max), 3'ss of exon 7
gtattaatttcttgccctacattaaaaaggaaaatactaattctggttttttccaaacaccacctttattaatttcaaaagctttctcattttttatacaaaattatcaataagtgaaaaatccaaatggggttgattttttttccttttttttaatgaatact-ttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
|| | |||| | | | | | | |||||| |||| |||| | || ||||| || | | | | | || || | || || | || | | | |||| | || | |||| |||| |||||||||||||| | ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||
---------------------------------gtaattgttctcataaagttcgatga--agttttatttatttt-----cttttataattacaatacagcttttttcttc--ttattattctaatc----tcacttgcattgaatgttatatggttaatattattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTGCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCAGATT
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G35610.1 (Glycine max), 3'ss of exon 8
gtattaatttcttgccctacattaaaaaggaaaatactaattctggttttttccaaacaccacctttattaatttcaaaagctttctcattttttatacaaaattatcaataagtgaaaaatccaaatggggttgattttttttc---cttttttttaatgaatact-----ttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
| ||| |||| ||| || |||| || || | || | | || || | | ||||||||| | |||||||| || | | | | |||| ||||| ||||||||||||||||||||||| ||||||||||| || |||| || || |||||||| ||||||||||| || ||||||||||| || |
----------------------------------------------------------------gtaattg--ttcagtgattttttccccttttctaataatgattaaactaattcaatattatattaattttgatttttacttatgtctttttttattggttgttaattataattagGATTCTCAAGAAGAACCAAAGAAAGACCTGAGGAGTAGAGGGTTATGCTTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGACT
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G04110.1 (Glycine max), 3'ss of exon 8
gtattaatttcttgccctacattaaaaaggaaaatactaattctggttttttccaaacaccacctttattaatttcaaaagctttctcattttttatacaaaattatcaataagtgaaaaatccaaatggggttgattttttttccttttttttaatgaatactttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
||| | || | ||| || |||| || | ||| || || | ||| ||| | || | || | | ||| || | | || | |||| ||||| |||||| |||| ||||||||||| |||||||||||||| ||||| || || ||||| || || |||||||| || ||||||||||| || |
-------------------------------------------------------------gtaattaattgttctgtgaattttttccttttcta---ataatgattaa------actaattcaatt----tttacttatgtcttgctttattggttgttgctatt--agGATTCTCAAGAAGAAGCAAATAAAGACCTGAGGAGTAGAGGGTTGTGCCTGGTTCCAGTGTCATGTACGCTCCAAGTTGGAAGTGACAATGGAGCTGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871899|gb|DT020954.1|DT020954EST: CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAG GAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTG
genomic: CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAGgtattaattt ... actttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTG
EST:
gi|30329176|gb|CD012438.1|CD012438EST: CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGTCCAG GAATTTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTG
genomic: CTGTTGAATGATAACGGCATGAAGAGGAAAGGAGCTTCCGACCAGgtattaattt ... actttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaatccaaatggggttgattttttttccttttttttaatgaatactttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
ttttaat putative branch site (score: 3)
tactttctc putative PPT
ttgattttttttcctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattaatttcttgccctacattaaaaaggaaaatactaattctggttttttccaaacaccacctttattaatttcaaaagctttctcattttttatacaaaattatcaataagtgaaaaatccaaatggggttgattttttttccttttttttaatgaatactttctcagGAATCTCATGAAGAACCAAAGAAAGACCTGAGAAGTAGAGGGTTGTGTCTGGTGCCTGTTTCATGCACACTGCAAGTTGGGAGCGACAATGGAGCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT