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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctagattatcaattatccagtatgctaaattgcacatttaacgtaggggattgcatttcatcctaggaataagaatgttggttattttctatttccatttttttgggtgatataaaaatgtcacagaaacatgaactcttatctgtttcttgtctctttgttaccttttcccatgttgatacttgataaagGAAGAACTGAAGAATAATAGAATTCAGAGGAGGGTTTATGAGTTGCTCTCTAAGGCGGCCTCAGGACCTTCTCTTACCAGTTCAGGTCAACGGGAACTGC

Basic information

species Vitis vinifera
transcript Vv11s0016g03550.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03550.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G35620.1 (Glycine max), 3'ss of exon 8
gtatatctagattatcaattatccagtatgctaaattgcacatttaacgtaggggattgcatttcatcctaggaataagaatgttggttattttctatttccatttttttgggtgatataaaaatgtcacagaaacatgaactcttatctgtttcttgtctctttgttacctt-ttcccatgttgatacttgataaagGAAGAACTGAAGAATAATAGAATTCAGAGGAGGGTTTATGAGTTGCTCTCTAAGGCGGC---CTCAGGACCTTCTCTTACCAGTTCAGGTCAACGGGAACTGC
                                                                                         | | |  |  || |||||||    | || ||||||         ||| |  | || | |    |  |  | ||| || | |  | |    ||| ||  |||||  |||||||||||| |||| |||  |||| ||||| || ||| ||||||||||||||||||| ||   |||   ||||   | | |  |||     ||||| || |   
--------------------------------------------------------------------------------------aaaaatgttaacctctatttttt---ataatttaaaaa---------aactttgattccttttcactaatgttatctatgattctatgtgttgatgctgtcacttggcaaagGAAGAACTTAAGAGTAACCGAATACAGAGAAGAGTTCATGAGTTGCTCTCTAAGGCTGCTACCTCGAAACCTAAACATGCTTGTTTGAACCAACGTGAGC---

upper sequence: Vv11s0016g03550.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G40480.1 (Glycine max), 3'ss of exon 8
gtatatctagattatcaattatccagtatgctaaattgcacatttaacgtaggggattgcatttcatcctaggaataagaatgttggttattttctatttccatttttttgggtgatataaaaatgtcacagaaacatgaactcttatctgtttcttgtctctttgttacctt-ttcccatgttgatacttgataaagGAAGAACTGAAGAATAATAGAATTCAGAGGAGGGTTTATGAGTTGCTCTCTAAGGCGGC---CTCAGGACCTTCTCTTACCAGTTCAGGTCAACGGGAACTGC
                                                                                         | | |  |  || |||||||    | || ||||||         ||| |  | || | |    |  |  | ||| || | |  | |    ||| ||  |||||  |||||||||||| |||| |||  |||| ||||| || ||| ||||||||||||||||||| ||   ||||  ||||   | | |  |||     ||||| || |   
--------------------------------------------------------------------------------------aaaaatgttaacctctatttttt---ataatttaaaaa---------aactttgattccttttcactaatgttatctatgattctatgtgttgatgctgtcacttggcaaagGAAGAACTTAAGAGTAACCGAATACAGAGAAGAGTTCATGAGTTGCTCTCTAAGGCTGCTACCTCAAAACCTAAACATGCTTGTTTGAACCAACGTGAGC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttatctgtttcttgtctctttgttaccttttcccatgttgatacttgataaagGAAGAACTGAAGAATAATAGAATTCAGAGGAGGGTTTATGAGTTGCTCTCTAAGGCGGCCTCAGGACCTTCTCTTACCAGTTCAGGTCAACGGGAACTGC
                                              ttgataaa  TA-rich tract