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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG

Basic information

species Vitis vinifera
transcript Vv11s0016g03320.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 3'ss of exon 3
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
| || || | | || || | ||| ||| ||| | | |||| | ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| || | ||||| || |||||||| |||||||| || ||||||||||
------------gtaatatctgataat--ttgaacccatgttttccaatgtcc---tttataatcaagcaacaaccttgtgcagGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G060611_T02 (Zea mays), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttc-ctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
|| ||||| | |||| ||| ||| | | | || ||| | ||||| | ||||| |||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||| || | ||||| ||||||||||| |||||||| || || |||||||
----------gtaaacttgttaaa-----ttttgatccatgtttttcgaatgtac-tttgtaatcatattactaggcttttctagGTCTGCTCTTGGGGAGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G154165_T02 (Zea mays), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| |||| | ||||| || | | || | | | || | ||| || | | ||| ||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||||||| || | || || || |||||||| || ||||| |||||||| ||||
gtatttttgttt-ccatttttttatat-ttgtagtaactgccatagaccatgtatccaagatatgttactgtatcccctttcagGTTTGTTCTTGGGGAGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 6
-----gtagggttgtgtgccattgttg----caagtctttttactccccctttatggtgt---ttatgt-ttttgggtgtattatt---tcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| | || ||| ||| || | ||| || | | || | |||| | | | | ||| | ||| ||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||||||| || | || || || |||||||| || ||||| |||||||| ||||
ctctcgtacttctacatggtatttttgtttccatttttttatatttgtagtaactgccatagaccatgtatccaagatatgttactgtatcccctttcagGTTTGTTCTTGGGGAGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| | || | | | | || | || | | | | |||||| | | | | | | |||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||
gtaagcttttataatactatttatcttggttatctttgcttctgccccctcttatgtatgttatcttcgcttcttatctttcagGTTTGCTCATGGGGAGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 8
gtagggttgtgtgcca----ttgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcct--ttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| | || | | | || | | | ||| | | | | ||||||||| || | ||| | |||||||||||||| |||||||| ||||||||||| || || |||||||| |||||||| || | ||||||||||| |||||||||||||||||||| |||||||
gtaagcttttataatactatttatcttggttatctttgcctctgtcccctcttatttatgtttatgttatcttcgcttcttatctttcagGTTTGCTCATGGGGAGGGTACACTTTTATCATTAATCTTATTCCGATGCATGTACTCTTGTGCATAGTAACCGGTCGCTATTCTTCTCGACTGTACATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
                                     tattatttcctttttc  CT-rich tract
 tattatttccttttt  TA-rich tract