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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG

Basic information

species Vitis vinifera
transcript Vv11s0016g03320.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g44360.2 (Oryza sativa), 3'ss of exon 3
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
            |  ||   ||  | |  ||  || |    |||    |||     ||| |         |   |||| | ||||| || ||||||||||| ||||| || || ||||||||||||||||| ||||| ||  | ||||| || |||||||| |||||||| || ||||||||||
------------gtaatatctgataat--ttgaacccatgttttccaatgtcc---tttataatcaagcaacaaccttgtgcagGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G060611_T02 (Zea mays), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttc-ctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
          ||    |||||  |     ||||  |||   ||| | |  | ||  ||| |     ||||| |   |||||  |||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||| ||  | ||||| ||||||||||| |||||||| || || |||||||
----------gtaaacttgttaaa-----ttttgatccatgtttttcgaatgtac-tttgtaatcatattactaggcttttctagGTCTGCTCTTGGGGAGGCTACACATTCATTATCAATCTTATCCCAATGCATGTCCTCTTGTGCATTGTAACTGGTCGTTATTCTTCGCGTCTCTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G154165_T02 (Zea mays), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
|||   |||| | ||||| ||  |  | || |     |  |  ||     | |||           || | | |||  ||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||  | || || || |||||||| || ||||| |||||||| ||||
gtatttttgttt-ccatttttttatat-ttgtagtaactgccatagaccatgtatccaagatatgttactgtatcccctttcagGTTTGTTCTTGGGGAGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 6
-----gtagggttgtgtgccattgttg----caagtctttttactccccctttatggtgt---ttatgt-ttttgggtgtattatt---tcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
     |||    |   ||  ||| |||    ||  | ||| || |     |   ||   |     |||| |    | | | ||| |   |||  ||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||  | || || || |||||||| || ||||| |||||||| ||||
ctctcgtacttctacatggtatttttgtttccatttttttatatttgtagtaactgccatagaccatgtatccaagatatgttactgtatcccctttcagGTTTGTTCTTGGGGAGGCTACACATTCATCATCAATCTTATCCCAATGCATGTTCTCTTGTGTATTGTGACTGGTCGTTACTCTTCACGACTTTATATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 8
gtagggttgtgtgccattgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| | || | |   | | ||     |  || |  |  |   |        |||||| | |     |    | |  | |||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||  | |||||||||||||||||||||||||||||||| |||||||
gtaagcttttataatactatttatcttggttatctttgcttctgccccctcttatgtatgttatcttcgcttcttatctttcagGTTTGCTCATGGGGAGGGTACACTTTTATCATTAATCTTATTCCAATGCATGTTCTCTTGTGCATAGTAACTGGTCGCTATTCTTCTCGACTGTACATTG

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 8
gtagggttgtgtgcca----ttgttgcaagtctttttactccccctttatggtgtttatgtttttgggtgtattatttcct--ttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
||| | || | |   |    || |      | | ||| |  |       |  | ||||||||| ||      |   ||| |   |||||||||||||| |||||||| ||||||||||| || || |||||||| |||||||| ||  | ||||||||||| |||||||||||||||||||| |||||||
gtaagcttttataatactatttatcttggttatctttgcctctgtcccctcttatttatgtttatgttatcttcgcttcttatctttcagGTTTGCTCATGGGGAGGGTACACTTTTATCATTAATCTTATTCCGATGCATGTACTCTTGTGCATAGTAACCGGTCGCTATTCTTCTCGACTGTACATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttactccccctttatggtgtttatgtttttgggtgtattatttcctttttcagGTTTGCTCTTGGGGAGGATACACTTTTATTATCAACCTTATTCCAATGCATGTGCTTCTTTGCATAGTAACTGGTCGCTATTCTTCTCGACTTTACATTG
                                     tattatttcctttttc  CT-rich tract
                                     tattatttccttttt  TA-rich tract