1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atcccacaatagcagaaacaagtgcatggtttatttgtctgctttaactcttttttcttatgggtttcttgcatgtcctaactttttttattcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATATTGTTGCTACTCGTGGGGCCCGTCTTTCTGCTGCAGGGATCCTAGGCA
species | Vitis vinifera |
transcript | Vv11s0016g03070.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110713107|gb|EE088738.1|EE088738
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110410290|gb|EC975970.1|EC975970
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110377656|gb|EC942735.1|EC942735
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAEST: gi|110377552|gb|EC942625.1|EC942625
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAA
EST: CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|22009929|gb|BQ794963.1|BQ794963
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: TGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110362192|gb|EC925708.1|EC925708
genomic: TGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110360527|gb|EC923703.1|EC923703
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATEST: gi|110723174|gb|EE100188.1|EE100188
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTTGTTGGCANCANACTAAAAGATATCTTGGAT ATACC-AATACTTCCCTGAAAACNNNNNNNGTTGTCAATGAACTGTGTGATEST: gi|110362857|gb|EC926415.1|EC926415
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
EST: CATCTCCTGATCTGAGGGTCGTTGGCAGCAAACTAAAAGATATCTTGGAT ATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
genomic: CATCTCCTGATCTGAGGGTTGTTGGCAGCAAACTAAAAGATATCTTGGATgtatgttact ... ttcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGAT
aactcttttttcttatgggtttcttgcatgtcctaactttttttattcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATATTGTTGCTACTCGTGGGGCCCGTCTTTCTGCTGCAGGGATCCTAGGCA
tcctaac putative branch site (score: 1)
ctttttttattcat CT-rich tract
taactttttttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcccacaatagcagaaacaagtgcatggtttatttgtctgctttaactcttttttcttatgggtttcttgcatgtcctaactttttttattcatgtcagATACCCAATACTTCCCTGAAAACAAGAAAAGTTGTCATTGAGCTGTGTGATATTGTTGCTACTCGTGGGGCCCGTCTTTCTGCTGCAGGGATCCTAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- cccacaa
- - - - - - - gaaacaa
- - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtc