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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG

Basic information

species Vitis vinifera
transcript Vv11s0016g02850.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactat-tgctggtac--agGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                         ||    ||||||   | ||||||       | |   | |||| |    ||    |   |||  || ||  ||||| |  | |||    | |  |   |    || |    |   ||  ||||||| |||||||||||||| ||||| | |||||| || |||||||| ||||| ||| ||||||| ||||||||  ||  ||||   |||||| | || |
-------------------------------------gtaatttatgattacaagcg-tttatt-------tttgcctgcaaagaagcattacaactcttttgatactgcacaatttttctattaaagaagtactgattttttctgtacattaaaactcagGTTATAGACAAGTCCTTTGGTTTTGATAGTGCTGTAGAAGAGGCCCAGCGTGCCATTGATGCAGCTCATGTTGAGGCTTCAAGTGCTGAGAATGGAATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaa--ttctctttttagttgattt---ttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                                                                   ||  || ||||||  ||| | |    |  |   |     || | ||  || |   | |  |    |||      || ||||| |||||||  || ||||| || |||||||| |||||||||||||||||||| || ||||| || ||||| ||| ||| |||   ||||||| |||| |
---------------------------------------------------------------------------------gtaatgatctttttcacattatattgacattagggtatgaattatggtgtatatgcataatttgtttctaccctatgtgcagGTAATTGACAGATCATTTGGTTTCGACACTGCAGTTGAGGAGGCCCAACGTGCAATAAATGCTGCTCATGTAGAAGCTGGAAGCGCCGAGAATGGTATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 6
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                                                | |    | |   ||| |  ||| ||   ||   ||||| |     | |||   |  |    ||||| || |         |||| | | |||||| || |||||||||||||| ||||||||||| || |||||||| ||  | || || ||||| || ||||||||  |||| |||   |||||| | ||||
----------------------------------------------------------------gtactt-tcttctttccagcacacttgagtttggattttcttcatgctaat---cgctaagattgatgttga---------attgtttgcacagGTGATCGACAAGTCCTTTGGTTTTGACACTGCGGTGGAGGAGGCTCAGAGGGCCATCAATGCTGCTCATGTTGAGGCTGAGAGTGCAGAGAATGGCATTG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G080375_T04 (Zea mays), 3'ss of exon 6
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                                        ||| |  | |       ||  |  ||||| |||           |  |||||| ||| | ||  || ||| |     | | |    |||   |||  | ||||| ||||||||||| ||||| |||||||||||||| |||||||||||  | || || ||||| || ||||| ||  ||||||||   |||||  | || |
----------------------------------------------------gtacgatctgctcctcctgcgtatttgaaaaaaaaata--------gctaattattgtccattcctgattgtagct-----tcatcctgaact---gcttatgcagGTGATTGACAAGTCGTTTGGATTTGACACTGCTGTGGAGGAGGCCCAGAGGGCCATCAATGCTGCTCATGTCGAGGCTGAAAGTGCGGAGAACGGCATCG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G879882_T01 (Zea mays), 3'ss of exon 1
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG------------------------------
                                                                                                            |   |   || |  |  | ||||| ||      |  |||   ||||  ||||||| |||||||| ||||| ||||| |||||||| || || ||||| ||||| ||||||||||| ||||| ||| ||  ||||   || ||| | || |                              
------------------------------------------------------------------------------------------------------------gcagagacctgtactatgctgattatt-----tgtatatatatggt-taggttatagacaagtcatttggttttgatactgctgtagaagaagcccagcgtgccatTAATGCAGCTCATGTGGAAGCTTCAAGTGCTGAAAATGGAATAGGTTTAGTGAAGCTTATGGGTCGCTATAGTG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G879882_T03 (Zea mays), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagata--taaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                          | ||| | || |   |    |  | | | |      ||||||||||   |    |  | | |  ||  |||   |   | || ||   |   || |  |  | ||||| ||      |  |||   ||||  ||||||| |||||||| ||||| ||||| |||||||| || || ||||| ||||| ||||||||||| ||||| ||| ||  ||||   || ||| | || |
-------------------------gtaatttttggccacttctacttgttctcttttcagcttgcatagatgcttttgctgcatacctcttgatttggaagactgtagtgcagagacctgtactatgctgattatt-----tgtatatatatggt-tagGTTATAGACAAGTCATTTGGTTTTGATACTGCTGTAGAAGAAGCCCAGCGTGCCATTAATGCAGCTCATGTGGAAGCTTCAAGTGCTGAAAATGGAATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                        ||   || || | ||  |||| | |      | |      |||||       |  | | |    |  | ||     |  | | |    ||     ||   |   ||    || | ||||| ||||||||||| ||||| || ||||| || ||||||||||| |||||||| || ||||| || ||||| ||| ||| ||||   |||||| |||| |
----------------------------------------gtaatatgtttctccacattt-tagtgatattttggtggaaaaaatggaagatgacatttgacatgatcacatgaaccttgtgtgcacga-----actcactgttacccatgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G443985_T03 (Zea mays), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                             | ||| |      |  | |||  |      || |||  || | ||  |   | |  | ||||            | |   || ||  |  | |   ||  |||   |||     | ||    | | ||||| ||||||||||| ||||| || ||||| || || |||||||| |||||||| || ||||| || ||||| ||  ||| ||||   |||||| |||| |
----------------------------gtaatatgttt--ctccacattttagtgacatttttgtgtaaaaatgga---agatgccatttgacatgatcacatgaacaacgaaccccatatgc-gtgaattc--accgttacccat----gtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G15170.1 (Glycine max), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaac--aatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                        ||  | | |||    |  | ||     | | | |||| ||| ||    ||     ||   ||  || ||||   ||||   | |   | ||  | ||         |  ||||   | |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |
----------------------------------------gtaaggttttat-tttcttctacattgtggctttaaactcataatttaaaccccattagcatcattgattggtaaatttcttct---gctgtctctt---------tgatgctta-atagGTTATTGATAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAATGGCATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G00870.2 (Glycine max), 3'ss of exon 5
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                        ||  | | ||        | ||     | | | |||| |||     |||||    || |||        | ||  ||  |  || ||  |||| | |  | | || |||||   | |||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||| | || ||| | || |
----------------------------------------gtaagttttttttttccttctacattgtggctttaaactca----taatttaaaccccatt--------agca--tcattaattggtaaatttcttctgctgtctcttgctta-atagGTTATTGATAAGTCTTTTGGCTTTGACACTGCTGTTGAGGAGGCTCAACGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTAGAAAATGGCATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G36050.1 (Glycine max), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctatt--ttttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                                 |||| ||  |||  ||   |     ||  |||   | |     | |   |||      ||  ||   |    |  ||   ||  | ||  ||| | ||         | |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |
------------------------------------------------gtacatctctttt-ctgtccattatcaatatcatggatagcagctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggctta-------atagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G03570.1 (Glycine max), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgac-caattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                                                            ||   ||| ||||  |  ||     | |||| || | |||||   |||  | | ||   ||| | |  || |||     ||   || | |||   | |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||  ||||||||   || ||| | || |
-----------------------------------------------------------gtacatcatggatagcagctctt---ccatttattgcttatttcccattagcaccatgagcttgtaaaatggtttaatgttct--ctctggctta-atagGTTATTGATAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAACGTGCTATAAATGCAGCACATGTTGAGGCTGAAAGTGGTGAAAATGGCATAG

upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S327_30V6.1 (Physcomitrella patens), 3'ss of exon 8
gtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggt--acagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                       | ||    ||    ||   |  | | |  ||  | ||| |  |||   |    |||      | |  | || |||       ||| |    |   | || |   |  || |    |  || |  |     |  |||| | ||||| ||||||||||| |||||||||||||| || || || ||||| || || |||||||| ||||| ||| | |||||||   | ||| || |||
----------------------gtactatacatcatccctactacacagtg-acgcgctttttcacatgtgtgcttattt-----ccacatgttgcctg-----aattcattcgtgtgcgttctgacttgttctcttttgggatttgtttcaatgaacagATAATTGATAAGTCCTTTGGATTTGACACTGCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717475|gb|FC066878.1|FC066878
EST:     TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG                         GTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT
genomic: TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCGgtacatctct ... gctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT
EST: gi|29784840|gb|CB341314.2|CB341314
EST:     TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG                         GTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT
genomic: TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCGgtacatctct ... gctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT
EST: gi|27584897|gb|CB007592.1|CB007592
EST:     TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCG                         GTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT
genomic: TAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCGgtacatctct ... gctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgaccaattctctttttagttgatttttacctccgactattgctggtacagGTTATTGACAAGTCCTTTGGCTTTGACACTGCTGTTGAGGAGGCCCAACGTGCTATTAATGCAGCACATGTTGAATCTGAAAGTATCGAGAATTGTATTG
                tttttagttgattttt  TA-rich tract