1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacttcagttcagcaataggtttgtctcatttgttttttgataccaacagcatgcatgacagatcccatctaaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCATCACCATATTCCATTCTTTGTGGCTGCACCCTTGACTTCCATTGATTT
species | Vitis vinifera |
transcript | Vv11s0016g00830.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|34543372|gb|CF511604.1|CF511604
genomic: AGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|30133085|gb|CB918424.1|CB918424
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110428947|gb|EC995431.1|EC995431
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110409927|gb|EC975602.1|EC975602
genomic: TGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110363814|gb|EC927433.1|EC927433
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110391575|gb|EC956560.1|EC956560
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|30252173|gb|CB969724.1|CB969724
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|34543287|gb|CF511519.1|CF511519
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110420049|gb|EC986310.1|EC986310
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCEST: gi|110366059|gb|EC929706.1|EC929706
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
EST: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATG GTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
genomic: TGGACGCGTGGATGCTGTCATTGTTGGAGCAGATCGCGTAGCTGCAAATGgtacttcagt ... aaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGC
tcatttgttttttgataccaacagcatgcatgacagatcccatctaaatatgcagGTGATACTGCTAACAAGATTGGGACCTATTCTCTGGCCTTAAGTGCAAAGCATCACCATATTCCATTCTTTGTGGCTGCACCCTTGACTTCCATTGATTT
atctaaa putative branch site (score: 3)
ttttttgata TA-rich tract