1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaagccttatttcaaaataaaaaagatgaactaattgaagtttaccttccatgcaagcatttaaacagttgatttgacttttgtcctactgggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTAATGGCTTGCTTTTCGAG
species | Vitis vinifera |
transcript | Vv10s0405g00030.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAG GTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTEST: gi|110691182|gb|EE068988.1|EE068988
genomic: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAGgtatgtgagc ... gggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATT
EST: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAG GTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTEST: gi|110357457|gb|EC921013.1|EC921013
genomic: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAGgtatgtgagc ... gggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATT
EST: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAG GTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTEST: gi|110713747|gb|EE089938.1|EE089938
genomic: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAGgtatgtgagc ... gggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATT
EST: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAG GTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTEST: gi|110723650|gb|EE101208.1|EE101208
genomic: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAGgtatgtgagc ... gggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATT
EST: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAG GTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAAAATT
genomic: TATCATCTCAAACTGAACTAGTCAAGTCCCTTCTTGCAACAGAGgtatgtgagc ... gggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATT
cttccatgcaagcatttaaacagttgatttgacttttgtcctactgggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTAATGGCTTGCTTTTCGAG
atttgac putative branch site (score: 4)
atttaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagccttatttcaaaataaaaaagatgaactaattgaagtttaccttccatgcaagcatttaaacagttgatttgacttttgtcctactgggaatgcagGTTGGAACAAAACGTGATAAGTCAACTGTGGATGCCACCACAAATAGAATTAATGGCTTGCTTTTCGAG
- - - - - - -aaaataa
- - - - - - - - - - aaaagat
- - - - - - - - - - - - - - - - aattgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacagt