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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT

Basic information

species Vitis vinifera
transcript Vv10s0116g01710.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G39070.1 (Glycine max), 3'ss of exon 9
gtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT
|||| || |       |||||   ||  ||| | | |      ||   ||||||     | |||  | | | | |  |   |||||||||| ||||||||||||||||| || ||||| ||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| |||||| || ||
gtaacaaaacc--tgtatttt---attttcttaagtt------atagtttatatccacttgctag-tgtaactgtcttaccacagGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTCCGTCATGCTACAGGACAATTATATGCCATTTCACAAGAT

upper sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G01660.1 (Glycine max), 3'ss of exon 8
gtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT
           || |||          || | |   |||     | | ||  | |   ||||  | | | | | |  |   |||||||||| | |||||||||||| || || ||||| ||||| |||| |||||||||||| || || ||||||||||||||| ||||||| |||||| || ||
-----------gtaagaaaacctg--tattttatttttg-----ttagtttaaatccacttcctagtgtaactgtcttaccacagGGGAGTGAGATACCATGAACCCGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTTCGGCATGCTACAGGACAATTATATGCCATTTCACAAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT
            aatcaattatatttgg  TA-rich tract