Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgctttctctctctctcatctcttattcagtgacatttgctacttattttgttgtgttttaatactgttgttattttgatctctcaatcatgttattagaggttagttctttaacattttgtttgtcctttagAAAGCTACCAAATGGTCAGAAAGAAAGGAGGCTGTTGCAGAGCTGACCAAGCTAGCTTCAACTAAAAGGATAGCACCTGGTGATTTCACAGAAATTTGTA

Basic information

species Vitis vinifera
transcript Vv10s0116g00490.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 3'ss of exon 8
gtcagtgctttctctctctctcatctcttattcagtgacatttgctacttattttgttgtgttttaatactgttgttattttgatctctcaatca--tgttattagaggttagtt--ctttaacattttgtttgtcctttagAAAGCTACCAAATGGTCAGAAAGAAAGGAGGCTGTTGCAGAGCTGACCAAGCTAGCTTCAACTAAAAGGATAGCACCTGGTGATTTCACAGAAATTTGTA
                                       || ||||  ||    ||  |  ||   | | |||    ||    |  |   | | |  | || |      ||   |   | ||   | || | ||      ||||||||||||| ||||| ||||||| ||| |||||||| ||||| ||||| || |||||||| ||||  || || || ||||||||    ||||| ||  
-------------------------------------gtatgtgctgatttgagtgcagcattgatacattgtc--catcacaacattatagtgaaatattgtcctcttttgaatgattctattttgttatctgatacc-agAAAGCTACCAAGTGGTCTGAAAGAAGGGATGCTGTTGCCGAGCTAACCAAACTTGCTTCAACCAAAAAAATTGCTCCCGGTGATTTTCATGAAATCTGCC

upper sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G070126_T02 (Zea mays), 3'ss of exon 8
gtcagtgctttctctctctctcatctcttattcagtgacatttgctacttattttgttgtgttttaatactgttgttattttgatctctcaatcatgttattagaggttagttctttaacattttgtttgtcct-ttagAAAGCTACCAAATGGTCAGAAAGAAAGGAGGCTGTTGCAGAGCTGACCAAGCTAGCTTCAACTAAAAGGATAGCACCTGGTGATTTCACAGAAATTTGTA
                                             ||  |    |||  ||  |  | ||| |||          | | | ||||| | |  ||  || |     ||    ||| || |||  |   ||||||| || ||||||||||| |||| ||| ||||| |||||||| |||||||| || ||| | ||||  || || |||||||||||    ||||||||  
--------------------------------------------gtatgtgacctgtcttgaatgcacactattg--------gccacactatcatatgaaaagtagtcatcatattggtttttggtgtgtgatgccagAAAGCAACTAAATGGTCAGAGAGAAGGGATGCTGTGGCAGAGCTAACCAAGCTTGCGTCAGCAAAAAAAATTGCTCCTGGTGATTTTCATGAAATTTGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctcaatcatgttattagaggttagttctttaacattttgtttgtcctttagAAAGCTACCAAATGGTCAGAAAGAAAGGAGGCTGTTGCAGAGCTGACCAAGCTAGCTTCAACTAAAAGGATAGCACCTGGTGATTTCACAGAAATTTGTA
                              ctttaac  putative branch site (score: 3)
                                      ttttgtttgtccttt  CT-rich tract
                               tttaacattttgttt  TA-rich tract