Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g09740.1 (Oryza sativa), 3'ss of exon 8
gtaagttc-ttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
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gtaagcgagtttttcagacaacaaattgactgctatgctgcttgcttaa---taactgagatttccttctcttcaaacagAAATATTGCAAACAACAATTTCAATGGCTGGATACCACAAGAATTCAGTTCAATCCCAGATCTGAC
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G103070_T02 (Zea mays), 3'ss of exon 8
gtaagttcttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
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gtaagtgaattgtcagacaatag--tttgacttat-attcatgcttg--cttgataacta-ataact-gttttaaacagAAACATAGCAAACAACAATTTCAGTGGTTGGATACCAAAAGAATTCAGCTCCATTCCAGATGTAAC
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 8
gtaagttcttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
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gtaagtttttctccctttg--gtccttaaattatc--tgcatgtcagtttctaatgttgcttta--taattttc--cagAAATGTTGCAAACAATAATTTCAGTGGATGGATACCCCATGAGCTTAGTTCCATCCGTAATTTCAT
upper sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G00970.1 (Glycine max), 3'ss of exon 8
gtaagttcttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
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gtaagttcttcaccctttg--ggccttgaatt----atctgcattcagtttctaatgttgc-tctatacttttc--cagAAATGTTGCAAACAATAATTTCAGTGGATGGATACCCCATGAGCTTAGTTCCATCCATAATTTCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
ccttaat putative branch site (score: 4)
ttttc putative PPT
tatccttaatttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcttttccttatgatgtgcttggatctgtgatttctacctatccttaatttttatgtccctagttttcaacagAAATGTTGCAAACAACAATTTCAGTGGATGGATACCATCAGAGCTTAGATCAATCCGAAAATTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA