Sequence
atgc intronic sequence ATGC exonic sequence...tggtatcaaaaattgatgaggaaatgcatgcttcagttttgctttttctggctttctaccctaatttcaattgtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 10
tggtatcaaaaattgatgaggaaatgcatgcttcagttttgctttttctggctttctaccctaattt-caattgtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
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ttttccaactccttgaacttgcattatctactgt-gttctacagttctagtgtctcaacctcggtagactttggtgtctgactagttgaaatttgtttcagATTGCTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATACTTTTGGATCTTTGGTGGAATCCAACAA
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G23390.1 (Glycine max), 3'ss of exon 8
tggtatcaaaaattgatgaggaaatgcatgcttcagttttgcttt---ttctggctttctaccctaatttcaatt--gtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
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-----tcagtatgttttccaactccttgaacttgaattttctactgtgttctagtgtcttaaccttggtagactttggtgtctgactaattgaaatttgtttcagATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCGACAA
upper sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G20010.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------------------tggtatcaaaaattgatgaggaaatgcatgcttcagttttg--ctttttctggctttctaccctaatttcaattgtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
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gtaagtgatgtaaatatcttagatatgttttctaaaacaatatactaatcgtttctctgaaatatggaatgttcatggagtattgatcctgaagctctctaaaagcgcaaaaaaaattttatt--agGTAAAGGTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTGAATATGGTAGCTGCATGTCATGTTATTCTCTTGGATCTTTGGTGGAATCCAACTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctggctttctaccctaatttcaattgtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
tactaaa putative branch site (score: 1)
tttcatt putative PPT
taatttcaattgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggtatcaaaaattgatgaggaaatgcatgcttcagttttgctttttctggctttctaccctaatttcaattgtactaaatgaatgaagtttcattgcagGTAACAGTCATGCTGATGTCCCTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCGGCTTCTCTTGTTATCCTTTTGGATCTTTGGTGGAATCCAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - caaaaat
- - - - - - - - - aggaaat
- - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa