Sequence
atgc intronic sequence ATGC exonic sequence...gtttaggcacagtagatgtccaaatcacagatctgattatcttagttattttttttcttctaactgttatcgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g52900.1 (Oryza sativa), 3'ss of exon 8
--gtttaggcacagtagatgtccaaatcacagatctgattatcttagttattttttttcttctaactgttat-cgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
|||| | ||| | ||| | | | | | ||| | | | || || | | | || | ||| | ||||||||||||| |||| |||||| |||||| ||||| ||||||||||||||||| || | |||||||
atatttatatatgaaagaa---tagatccaacttttctcttatgttgttgagatgctagtgttaggtgctttgtaccactaaaggtcaatgttcttttggcagTCTATGCAAAAAGGTGATCCATCTTGGAGCGGTTACATCTATGCTTTCTCAATCTTCGCTGGAGTG
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G084181_T01 (Zea mays), 3'ss of exon 8
--------------------------------------------gtttaggcacagtagatgt---ccaaatca--cagatctgattatcttagt-tattttttttcttctaactgttatcgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
| | | || | | | || | | | || | |||||| | ||| || | || || | | | | || || | | | |||||||||||| |||| |||||| |||||| || || ||||||||||||||||| |||| ||||||
gtacacttctcattccatgacccctacccatcattaacagtgctactgaagtgcattgattctagaacagactgtgcgattatgcatttcttagcgcacctttattatgctctttgc-accaataaactttgtttcccccccttttccagTCTATGCAAAAAGGTGATCCATCTTGGAGCGGGTACATCTATGCTTTCTCAATCTTTGCAGGAGTG
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G34660.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttaggcacagtagatgtccaaatcacagatctgattatcttagttattttttttcttctaactgttatcgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
|||| | | | || | | || | | || ||||| | ||| | || | ||| || | ||| || || || | || || || | ||||| |||||| | | | ||||||||||| ||||| |||||||| |||||||| ||||||||||||
gttt--gttcttttcttggcagattcggaaacct-attat--tggttcaatattcttatctgacaat-atctctcattttgtatgtcaaactatatacagTCAATGCAAGAGGATGCGCCAGCTTGGATGGGTTACATCTATGCGTTCTCAATCTTTGTTGGAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattttttttcttctaactgttatcgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
ttatattatttgatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttaggcacagtagatgtccaaatcacagatctgattatcttagttattttttttcttctaactgttatcgcttatattatttgatgaatcatgtgcagTCTATGCAACAAGGAGATCCAGCTTGGATTGGTTATATCTATGCTTTCTCAATTTTTGTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - -ccaaatc