1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctgctgtgagccgttcttccttgaactggctccccaacccatcataaatcaggtattttttagagcatgaacacaaagttgattgattacctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG
species | Vitis vinifera |
transcript | Vv10s0003g02590.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGEST: gi|110732518|gb|EE107876.1|EE107876
genomic: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
EST: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGEST: gi|349832459|gb|FQ421020.1|FQ421020
genomic: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
EST: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGEST: gi|349808085|gb|FQ402476.1|FQ402476
genomic: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
EST: CCATTCCATCAAAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCACAGAAGGAACTGAGCCTGAATGTGEST: gi|56688232|gb|CX126135.1|CX126135
genomic: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
EST: TCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGEST: gi|110699183|gb|EE075958.1|EE075958
genomic: TCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
EST: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAA GCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
genomic: CCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttata ... cctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTG
taaatcaggtattttttagagcatgaacacaaagttgattgattacctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG
gattgat putative branch site (score: 4)
ttacctctt CT-rich tract
tattttttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgctgtgagccgttcttccttgaactggctccccaacccatcataaatcaggtattttttagagcatgaacacaaagttgattgattacctcttgcagGCAATGCATGCTTTCAGTGCAGCATCAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gctgctg
- - - - - - - - -ttccttg
- - - - - - - - - - - - - -tggctcc
- - - - - - - - - - - - - - - - - ccaaccc
- - - - - - - - - - - - - - - - - - - - - - - aaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaag