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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttaaacaaaaactcataagcaagtacacaaatttcttaactccctaactgagaacttcctgctgattacagTGGTGCAGTTGGTGCGAGGCTATCCACCGATGCTTCAACAGTGCGAGGTCTCGTGGGTGATGCATTGGCCCTACTTGTCCAGAACTTAACAACAATCATA

Basic information

species Vitis vinifera
transcript Vv10s0003g02580.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02580.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G09680.1 (Glycine max), 3'ss of exon 8
----gtgtgttaaacaaaaactcataagcaagta-cacaaatttcttaactccctaa---ctgagaacttcctgctgattacagTGGTGCAGTTGGTGCGAGGCTATCCACCGATGCTTCAACAGTGCGAGGTCTCGTGGGTGATGCATTGGCCCTACTTGTCCAGAACTTAACAACAATCATA
    || |||||| ||  |  |  |||  | |||  | || |   |  ||||   ||    | || |  |    ||  || |||||||||||||||||| ||| |||| || |||||||||||||||  | |||| ||||||||  ||||||| ||  |||| || ||| || ||||||||| |
gtacgtatgttaa-catgacattttaattatgtaatataattccttctactcatcaaattttaaggaaatgaatctctttccagTGGTGCAGTTGGTGCAAGGTTATCTACAGATGCTTCAACAGTGAAAAGTCTAGTGGGTGACACATTGGCTCTCATTGTGCAAAACATATCAACAATCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaagtacacaaatttcttaactccctaactgagaacttcctgctgattacagTGGTGCAGTTGGTGCGAGGCTATCCACCGATGCTTCAACAGTGCGAGGTCTCGTGGGTGATGCATTGGCCCTACTTGTCCAGAACTTAACAACAATCATA
                                      cttcctgct  CT-rich tract
            aaatttcttaa  TA-rich tract