1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctttggtgtttcttagaaaaactaaatacaaaatctttgtaacatggcagatcatgaatttgtaattggtaacaagacatgttatttgtcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGTGGATGTTTTTTCATTTGCTCTAATTCTACAAGAG
species | Vitis vinifera |
transcript | Vv10s0003g02060.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTT GTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGEST: gi|33407698|gb|CF213325.1|CF213325
genomic: TGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTTgtgagtatgc ... tcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGG
EST: TGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTT GTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGEST: gi|30255141|gb|CB971588.1|CB971588
genomic: TGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTTgtgagtatgc ... tcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGG
EST: TGTTAATACAGTTAAAGAAGATTACCCTCTAAGATCTCAAGAAACTTCTT GTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGG
genomic: TGCTAATACAGTTAAAGAAGATTACCCTCTAATCTGTCAAGAAACTTCTTgtgagtatgc ... tcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGG
atggcagatcatgaatttgtaattggtaacaagacatgttatttgtcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGTGGATGTTTTTTCATTTGCTCTAATTCTACAAGAG
tggtaac putative branch site (score: 2)
atgaatttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttggtgtttcttagaaaaactaaatacaaaatctttgtaacatggcagatcatgaatttgtaattggtaacaagacatgttatttgtcatgaacagGTCGATATTTGGCTCCAGAGGTTTTTAAAAATGAAGCTTATGATACCAAGGTGGATGTTTTTTCATTTGCTCTAATTCTACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - -tggtgtt
- - - - - - - - agaaaaa
- - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - -acatggc
- - - - - - - - - - - - - - - - - - - - - - - - - -gatcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtt