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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagattctattggtttttttatttatccttatttggttcattctatatttttctgttcaactaaagccctggtttccacacagAGGGGTGCATCAAACAGCAAGTTTCTCAACTATTTAAACAAACACATAATACCTGTTTTTGATAAG

Basic information

species Vitis vinifera
transcript Vv10s0003g00670.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00670.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ36702 (Selaginella moellendorffii), 3'ss of exon 8
gtatagattctattggtttttttatttatccttatttggttcattctatatttttctgttcaactaaagccctggtttccacacagAGGGGTGCATCAAACAGCAAGTTTCTCAACTATTTAAACAAACACATAATACCTGTTTTTGATAAG
                                       | ||        || | | |||   |       || | ||  | ||||||||||| |||||||||||||| || |||||| | |||||     |  | ||||  || ||||||
------------------------------------gtatgcaaaaagacgttctttattcttattggcttttgctatctgc-cagAGGGGTGCTTCAAACAGCAAGTTCCTGAACTATATCAACAAGTCGTTGTTTCCTGCCTTCGATAAG

upper sequence: Vv10s0003g00670.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ27966 (Selaginella moellendorffii), 3'ss of exon 8
gtatagattctattggtttttttatttatccttatttggttcattctatatttttctgttcaactaaagccctggtttccacacagAGGGGTGCATCAAACAGCAAGTTTCTCAACTATTTAAACAAACACATAATACCTGTTTTTGATAAG
                                       | ||      | || | |||||   |       || | ||  | |||||||| || ||||||||||||||||| |||||| | |||||     || | ||||  || ||||||
------------------------------------gtatgcaaaaagaagttctttgttcttattggcgtttgctatctgc-cagAGGGGCGCTTCAAACAGCAAGTTTCTGAACTATATTAACAAGTCTTTATTTCCTGCCTTCGATAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttggttcattctatatttttctgttcaactaaagccctggtttccacacagAGGGGTGCATCAAACAGCAAGTTTCTCAACTATTTAAACAAACACATAATACCTGTTTTTGATAAG
                              aactaaa  putative branch site (score: 2)
                                            tttccac  putative PPT
        ttcattctatattttt  TA-rich tract