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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcaacatgatttgagatccttgagggttttgattcctaaaactaaaataacagtttccatactttcatgtctgattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTT

Basic information

species Vitis vinifera
transcript Vv10s0003g00300.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g13770.2 (Oryza sativa), 3'ss of exon 8
gtaagtgcaaca----tgatttgagatccttgagggttttgattcctaaaactaaaataacagtttccatactttcatgtctgattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTT
|||||||  | |    || |   |||    | |   | ||  | | | |  || |  |    || | | |  || |||| |  | ||  ||| | ||||||||||||||  || ||||||| ||||| ||||||||||| ||||| ||  |||| |||||| | || || || || |  |||||| |||| |
gtaagtgtgataaatttggtccaagaagtataatattattcgtgcattatgcttac-tgttggtgttcctctttccatgaccaactt-gcagATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAAGTAGGCTTGACAAAGTTCGTTTCTGACCTTTTCTTCGTGGGACTGTTCT

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G24360.1 (Glycine max), 3'ss of exon 8
----------------------------gtaagtgcaacatgatttga-gatcct------tgagggttttgattcctaaaactaaaataacagtttccatactttcatgtctgattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTT
                            | || |  ||  ||  |||  |||  |      | ||    ||   |  |     |   ||  ||      ||   |   | | ||||   |||| |||| || ||   |||| ||||||| ||||| |||||||| ||||||||||| ||| ||  ||||||| ||||||||||||| ||||| || |||||||
gtgagtgaaacctgtctaaattccccttgaaaatttaatttgtattgtcgattttatataataagttgcttagctattgtttttggcattgcatccgtgatcaatcattatttgataccacagTTGGAAGGGCCCACACTGTTGAAGCACGGCTTCAATGATGCTATTGCTAAAGTAGGTTTGGTCAAGTTCGTCTCAGATCTCTTCTGGGTTGGTATGTTTT

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 8
-----------------------------gtaagtgcaacatgatttgagatcct------tgagggttttgattcctaaaactaaaataacagtttccatactttcatgtctgattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTT
                               ||||  |   | |||   |||  |      | ||    ||  ||  |     |   ||  ||      ||   |   | | ||||   |||| |||| || |||  |||| ||||| | ||||| |||||||| ||||||||||| ||| ||  ||||||| ||||||||||||| ||||| || |||||||
gtgagtgaaacctgtctaagttccccttgaaaagttaatttttattgtggattttatataataagttgcttagttattgtttttggcattgcatccctgattaatcattatttgataccacagTTGGAAGGGCCTACACTGTTGAAGAACGGCTTCAATGATGCCATTGCTAAAGTAGGTTTGGTCAAGTTCGTCTCAGATCTCTTCTGGGTTGGTATGTTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583035|gb|DV220554.1|DV220554
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|26265652|gb|CA816715.1|CA816715
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|28965272|gb|CB344305.1|CB344305
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCTCCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110388308|gb|EC953043.1|EC953043
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110376459|gb|EC941524.1|EC941524
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|349829387|gb|FQ419919.1|FQ419919
EST:     CACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|351031379|gb|FQ445404.1|FQ445404
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|229418699|gb|GO652936.1|GO652936
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|71870783|gb|DT019838.1|DT019838
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110363008|gb|EC926573.1|EC926573
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|349813488|gb|FQ413722.1|FQ413722
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110361951|gb|EC925457.1|EC925457
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|30252871|gb|CB970422.1|CB970422
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|71883070|gb|DT032125.1|DT032125
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|28965323|gb|CB344356.1|CB344356
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|18458226|gb|BM436504.1|BM436504
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|32244911|gb|CD710730.1|CD710730
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|351048322|gb|FQ449414.1|FQ449414
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|30252957|gb|CB970508.1|CB970508
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110426800|gb|EC993222.1|EC993222
EST:     ATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: ATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|34542626|gb|CF510858.1|CF510858
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|352794370|gb|FQ481601.1|FQ481601
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|33401641|gb|CF207268.1|CF207268
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|110389432|gb|EC954269.1|EC954269
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
EST: gi|351049192|gb|FQ449914.1|FQ449914
EST:     CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATT                         GTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA
genomic: CTTATATTTCCATCATTGCTCTCATTGTCTGCATTCCACCGGCTCTCATTgtaagtgcaa ... gattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgattcctaaaactaaaataacagtttccatactttcatgtctgattttacagGTGGAGGGACCTCAACTGATGAAGCATGGCTTTAATGATGCAATTGCTAAAGTGGGTCTGACCAAGTTCCTCTCAGATCTCTTTTGGGTGGGAATGTTTT
         taaaactaaaataaca  TA-rich tract