Sequence
atgc intronic sequence ATGC exonic sequencegttattagattttttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggcaattcttattttggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G128877_T03 (Zea mays), 3'ss of exon 5
gttattagattttttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggcaattcttattttg-gtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
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--------------------gtgaaaaaaatgcta---cttctcatgcagaagatcaaatttcgtaaggattgaagcatccgcttaatgtgtttaattcatttccttgcagACATGGCCTGTGCGTTCACCAAGGCCTGTTGCGTCGAAGCTTGCTGCGGATACACCTCTTCTGACAGGGCAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G00430.1 (Glycine max), 3'ss of exon 8
gttattag--attt-tttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggca-attcttattt--tggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
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gtttctagccatttattttgttcatcatttcactgtagttgcttcattgaagtattggtattccttatgattatcctacattacaacttccttgcgtgtactttacccattttcagACTTGGCCTGTACGTACACCCAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G23990.1 (Glycine max), 3'ss of exon 8
gttattagattttttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggcaattct---------tattttggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
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gtttctag-ccatttatttcgttcaccacttaattgtagttac--ttcattaaagtattggtactccttatgattatcctacattacaacttccttgtgtgtactttacccattttcagACTTGGCCCGTACGTACACCAAGGCCTGTTGCATCAAAACTTGCAGCTGATACTCCTCTTCTTACTGGTCAG
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 3'ss of exon 9
gttattagattttttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggcaattcttattttggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
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---gtttgcatgtatctttaatcttcctacttgcaaacgtaaattttaagctatttggttcactc------------tgttaaattggtttgg--ttgatatatgt-cagAGCTGGCCTGTACGTACGCCTAGGCCAGTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110692053|gb|EE070859.1|EE070859EST: CAAGGTGTGATAAAGCACATTACCATGCTTCAG ACTTGGCCTGTACGTACACCTAGGCCTGTTGCATCAAAGCTGGCTGCTGAT
genomic: CAAGGTGTGAAAAAGCAAATTACCATGCTTCAGgttattagat ... ccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttgtgtccaaaaatggcaattcttattttggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
tttcatcc CT-rich tract
aattcttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttattagattttttatttcatggatctatttttggagcttaacattaactaaatccttgtgtccaaaaatggcaattcttattttggtttgtgtttcatccatatatagACTTGGCCTGTACGTACACCTAGGCCTGTTGCGTCAAAGCTGGCTGCTGATACCCCACTACTTACAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT