1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatagtcactttgtacgtgctgcaattttcaggtctttaaaggaggatagcccaaatttactaatttgtcatcaaatttttgtttccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCATCAAGCCTCTCCAACAG
species | Vitis vinifera |
transcript | Vv09s0018g01780.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110375956|gb|EC940987.1|EC940987
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110386695|gb|EC951311.1|EC951311
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110411796|gb|EC977519.1|EC977519
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|111125066|gb|EE253677.1|EE253677
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|349823504|gb|FQ414914.1|FQ414914
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGGTTGTTGGCCAAGGCAAAGTTTCATEST: gi|110372559|gb|EC936737.1|EC936737
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCAT
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110387079|gb|EC951719.1|EC951719
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|29784413|gb|CB345109.2|CB345109
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110385943|gb|EC950505.1|EC950505
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110413183|gb|EC978960.1|EC978960
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|110372429|gb|EC936593.1|EC936593
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCEST: gi|29785638|gb|CB342854.2|CB342854
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
EST: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAG GGTTTGTTGGCCAAGGCAAAGTTTCGTGTCAGCTACCGCGGAAAAGCCATC
genomic: GCATCACTGACATTAACATAGATGTTGAATCAGGAGAGTTTGACACTGAGgtaatagtca ... ccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATC
aggaggatagcccaaatttactaatttgtcatcaaatttttgtttccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCATCAAGCCTCTCCAACAG
tactaat putative branch site (score: 1)
tttttgtttccacttc putative PPT
aaatttactaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagtcactttgtacgtgctgcaattttcaggtctttaaaggaggatagcccaaatttactaatttgtcatcaaatttttgtttccacttctagGGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCATCAAGCCTCTCCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT