1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccctccatttcatcactcaattaacaattgattacctctctcccagcttcaatttattgtctcctattatgatactttaaatatgtcattttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCCTGAAACACCCCCGACCCCCCCTCCGCAAGGAAATGAGCCACAGCCTCAG
species | Vitis vinifera |
transcript | Vv09s0002g04680.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAGTCCTCCTGTCCGCCGATGTGAGAAAGAAAGCTGAAGCAGNTGACAG GGCTTGCAAGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCCEST: gi|110364620|gb|EC928007.1|EC928007
genomic: CCAGTCCTCCTGTCCGCCGATGTGAGAAGGAAGGCTGAGGCAGTTGACAGgtaatgattc ... ttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCC
EST: CCAGTCCTCCTGTCCGCCGATGTGAGAAGGAAGGCTGAGGCAGTTGACAG GGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCCEST: gi|110699605|gb|EE076751.1|EE076751
genomic: CCAGTCCTCCTGTCCGCCGATGTGAGAAGGAAGGCTGAGGCAGTTGACAGgtaatgattc ... ttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCC
EST: CCAGTCCTCCTGTCCGCCGATGTGAGAAGGAAGGCTGAGGCAGTTGACAG GGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCC
genomic: CCAGTCCTCCTGTCCGCCGATGTGAGAAGGAAGGCTGAGGCAGTTGACAGgtaatgattc ... ttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCC
gcttcaatttattgtctcctattatgatactttaaatatgtcattttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCCTGAAACACCCCCGACCCCCCCTCCGCAAGGAAATGAGCCACAGCCTCAG
tcattttccc CT-rich tract
tattatgatactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctccatttcatcactcaattaacaattgattacctctctcccagcttcaatttattgtctcctattatgatactttaaatatgtcattttcccaacagGGCTTGCAGGCCAATAATGACAAAGCCAAAACCAGCGAAGCCTGCTGCTCCTGAAACACCCCCGACCCCCCCTCCGCAAGGAAATGAGCCACAGCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ccctcca
- - - - - - tcactca
- - - - - - - - - - - aacaatt
- - - - - - - - - - - - - - - - - - -ctctccc