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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG

Basic information

species Vitis vinifera
transcript Vv09s0002g03740.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 8
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaacc-ttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
                                             ||||  ||| | ||   ||  ||    | |  || || |||  |||  |||          |||| ||| ||||||             || | | |||| ||   || |  ||||||||||||||||| || ||| | ||||| ||||| |||||||||||||| || ||||| || ||||| ||||||
--------------------------------------------gtacattaatttgaattgttgcat-caaaatatataatattttttgtttttg---------tatttaact-tcaaaa-------------ttaagcgtgtttatactat-tgttagCCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G21610.1 (Glycine max), 3'ss of exon 9
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
    | |   | ||    ||| ||   |        |       | ||||| |     ||   | || | ||  |    || | |  | ||  |   ||| | | || |   | |     | |  |     | || | |||||| ||   || |  ||||||||||||||||| |||||| | || || ||||| |||||||||||||| || ||||| || ||||| ||||| 
----gtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacac-acatatatatatatatatatata-tatatatatatat-atatatatatttgttttgtatttaactcaaaattgaccatgtttatactat-tgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCA

upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 8
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
                                                                               | |||   | || ||| ||    || ||||   |||    |  |   |  | | || | ||||||||||  || |  ||||||||||||||||| |||||| | ||||| ||||| || |||||||| || || ||||| || ||| | || | |
-----------------------------------------------------------------------------gtacgttaattttatttgtttcatcaatatttatttatttgtatttaactttttaattaagcatgttcattctat-tgttagCCATGGAGTGTGCCAGAAGTGCTACGTCCACTGTACGAGTCATCAACGGTACTGGCTCAGAAGACATCTATCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
 atttgac  putative branch site (score: 4)
                                      ttcatttcatctcct  putative PPT
        tatcaaaaa  TA-rich tract